nextflow pipeline

This repository is a template and a library repository to help you build nextflow pipeline. You can fork this repository to build your own pipeline.

Getting the last updates

To get the last commits from this repository into your fork use the following commands:

For the first time:

git remote add upstream git@gitbio.ens-lyon.fr:pipelines/nextflow.git
git pull upstream master

Then to make an update:

git pull upstream master
git merge upstream/master

Getting Started

These instructions will get you a copy of the project as a template when you want to build your own pipeline.

you can follow them here.

Building your pipeline

You can follow the building your pipeline guide for a gentle introduction to nextflow and taking advantage of this template to build your pipelines.

Existing Nextflow pipeline

Before starting a new project, you can check if someone else didn’t already to the work !

• on the nextflow project page
• on the nf-core project

Contributing

If you want to add more tools to this project, please read the CONTRIBUTING.md.

Authors

• Laurent Modolo - Initial work

See also the list of contributors who participated in this project.

License

This project is licensed under the CeCiLL License- see the LICENSE file for details