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Created with Raphaël 2.2.011Oct20Sep1396111Aug630Jul1915139875230Jun29282422211716942131May28262521201817121110765329Apr28272622212019161514138225Mar22171615121110985225Feb242220181715104329Jan272522203Dec9Oct29Sep931Aug1724Jul20138730Jun29212May27Apr2321201731Mar302725247Feb17Jan138713Dec9628Nov27222018136518Oct18Jul12Jun117429May28232221201716151410973217Apr1612929Marmodification complete avec Nicolas, intégration de tous les paramètre du fichier de config dans les channelsyaml modificationpreparation yaml config filepreparation yaml config fileyaml file creation before integrationdémarrage modif peak calling, prise en charge des IP et Ctrl.démarrage modif peak calling, prise en charge des IP et Ctrl.modif pipeline bamcoverage deeptools pour chipseq et paramètresmodif pipeline bamcoverage deeptools pour chipseq et paramètresmodif chipster.nf & bedtools/main.nf ajout des fonction de création et sloping des bed files. Il manque encore la transformation des bed en BigWig.binsize modification in deeptools main.nf function bamtobigwigsrc/chipster.nf fonctionnel utilisé sur les data Chipseq CTCFsrc/chipster.nf fixed single & paired end, until bigwigsrc/chipster.nf fix pipe with .map, paired-end fastqidx genomeidx genome modindexed genome paramsfisrtkb: create a backup of t2g.txt as kb rewrite itkb: remove gffutils buggy dependency for t2g.txt constructionkb: go back to working 0.26.0 versionkb: add libcurl to dockerfilegffread: remove empty linekb: update to 0.26.3t2g.py: fool proof output formatbedtools: add v2.30.0kb: enable infer tr and gn in t2g.pykb: fix cardinality for split() stept2g.py: fix indentationmlepetit/nextflow-Maximefix typo in *.mdfix typo in .md fileskb: change --lamano option into --workflow lamanobioawk: fix fasta2transcriptslength processkb: fix missing line :330gatk4: rename _out option for gvcfgatk4: add gvcf to variant_calling_outdocker: add htseq 0.13.5gatk4: change file_prefix definition to handle Mapgatk4: remove map only usefull for testing