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Created with Raphaël 2.2.029Apr28272622212019161514138225Mar22171615121110985225Feb242220181715104329Jan272522203Dec9Oct29Sep931Aug1724Jul20138730Jun29212May27Apr2321201731Mar302725247Feb17Jan138713Dec9628Nov27222018136518Oct18Jul12Jun117429May28232221201716151410973217Apr1612929Mar28272625222120137654120Feb15107521Dec2019emaze-zero: integrate alntools into named workflowemase-zero: add count workflowflexi_plitter: capture all outputkb: add tr2g conversionalntools: add bam2ec processkb: add transcript to gene script to Dockerkb: add ps to Dockerfileflexi_splitter: add other example of yaml fileflexi_splitter: add main.nf and yaml examplekb: first draft of main.nfDocker: add flexi_splitter 1.0.2deeptools: update to v3.5.1deeptools: update to v3.5.1deeptools: add ps to Dockerfiledeeptools: update main.nf to v3.5.0nf_modules: minors fix in deeptools and samtoolsdeeptools: update process paramssamtools: fix split_bam @ optionkallisto: fix singleend reads tableREADME.md: add existing pipeline sectionnf_projects.md: update listdoc/ cleanupgatk4: match gatk3 params.*building_your_pipeline.md: add details*.md: set right language for each code blockCONTRIBUTING.md: accept NF modificationREADME.md: add link to building_your_pipeline.mdgetting_started.md: add ccin2p3 sectionCONTRIBUTING.md: fix img path*.md: fix img pathCONTRIBUTING.md: fix merge request img pathmultiqc: set QC as default out folderfastp: fix json output filegatk3: fix high_confidence_snp_filter callfix typo in building_your_pipeline.mdminimap2: fix single-end handlingupdate guide to build pipelinekallisto: fix output capturenf_modules: fix paired-single end handlingadd build_your_pipeline.md: with the 2 first steps of the guide