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Created with Raphaël 2.2.027Nov222018136518Oct18Jul12Jun117429May28232221201716151410973217Apr1612929Mar28272625222120137654120Feb15107521Dec2019141326Oct242316121110986543226Sep2524201817141331Aug292724232221231Jul3027262524231312327Jun2019187654131May3025Merge branch 'master' into devpsmn: test of new symlink structure for conda envpsmn: add ribotish_0.2.4src/ cleanup .pbs exampledocker: fix ucsc imgpsmn: add axtchain_377psmn: add liftover_357singularity: remove module as they are pulled from docker since 0.4.0docker: add liftover:357docker: change FROM url to add lbmc/ prefixdocker: change FROM url to add lbmc/ prefixupdate docker script for v0.4.0 to automatise pushupdate docker script for v0.4.0docker_files: fix sambambaREADME.md: increave visibility for 0.4.0 transitionnf_modules: add STARupdate docker script for v0.4.0docker_files: add starversion 0.4.0add update_config.sh file to update to the last config versionconda_packages.sh: fix CONDA_ENVS varconda_packages.sh: add CONDA_ENVS def.conda_packages.sh: fix conda init linkconda: add start 2.7.3anf_modules: rm ccin2p3_conda section in config filesnf_modules: bowtie fixe conda pathconda_psmn: fix path of the scripts in configs filesconda_psmn.sh: hide filetraining_dataset.config: fix psmn pathtraining_dataset.config: update conda_psmn.sh path to use $workflowtraining_dataset.config: update conda path to use .conda_envs linkpsmn: add symlink to conda envstraining_dataset.config: update CONDA_ENVStraining_dataset.config: update config to match latest changeshide src/* files not necessary for usersrename Kallisto_index.pbs to have more explicite namePSMN: add install script for conda modulesnf: change psmn config to use condaDocker: update name of module to lbmc/module:versionsingularity: update configs to use docker hub and specified cacheDir