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Created with Raphaël 2.2.016Apr1514138225Mar22171615121110985225Feb242220181715104329Jan272522203Dec9Oct29Sep931Aug1724Jul20138730Jun29212May27Apr2321201731Mar302725247Feb17Jan138713Dec9628Nov27222018136518Oct18Jul12Jun117429May28232221201716151410973217Apr1612929Mar28272625222120137654120Feb15107521Dec2019141326Oct2423minimap2: fix single-end handlingupdate guide to build pipelinekallisto: fix output capturenf_modules: fix paired-single end handlingadd build_your_pipeline.md: with the 2 first steps of the guideREADME.md: add last update sectionCONTRIBUTING.md: add Forking definitiongetting_started.md: add link to building your pipeline guideCONTRIBUTING.md: fix typoCONTRIBUTING.md: add complex processes stepMerge remote-tracking branch 'origin/master'CONTRIBUTING.md: fix typoCONTRIBUTING.md: complet Docker partfastp: fix accel_s1plus protocolnextflow.config: change singualrity cacheDir for profile psmnbwa: fix variable name :46bwa: add missing { :52bwa: test if file_id is Mapbwa: new change and library defbwa: fix missing } :52bwa: handle dict as file_id for mapping_fastqbowtie2: fix missing variable :49bwa: change index and fastq order for mappingpicard: add publishDir optionbwa: fix library variable definitionbwa: fix typo in index_fastasamtools: update publishDir directivesnf_modules: fix bug in variable names for samtools and bwanf_modules: update last main.nf to change in CONTRIBUTING.mdCONTRIBUTING.md: add info on channel creationbwa: update to match CONTRIBUTING.mdbowtie: update to match CONTRIBUTING.mdfastp: update accel_s1plus protocolsamtools: update to follow CONTRIBUTING.mdbowtie2: replace pair_id by file_idbowtie2: fix input tuple :45bowtie2: update to match contributing.mdnf_modules: update module from g2gtools to multiqc to match the CONTRIBUTING.mdfastp: fix variable name in fastp_accel_1splusmv PSMN singularity img to /Xnfs/abc/singularity/