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Created with Raphaël 2.2.026Apr22212019161514138225Mar22171615121110985225Feb242220181715104329Jan272522203Dec9Oct29Sep931Aug1724Jul20138730Jun29212May27Apr2321201731Mar302725247Feb17Jan138713Dec9628Nov27222018136518Oct18Jul12Jun117429May28232221201716151410973217Apr1612929Mar28272625222120137654120Feb15107521Dec2019141326Oct2423deeptools: update process paramssamtools: fix split_bam @ optionkallisto: fix singleend reads tableREADME.md: add existing pipeline sectionnf_projects.md: update listdoc/ cleanupgatk4: match gatk3 params.*building_your_pipeline.md: add details*.md: set right language for each code blockCONTRIBUTING.md: accept NF modificationREADME.md: add link to building_your_pipeline.mdgetting_started.md: add ccin2p3 sectionCONTRIBUTING.md: fix img path*.md: fix img pathCONTRIBUTING.md: fix merge request img pathmultiqc: set QC as default out folderfastp: fix json output filegatk3: fix high_confidence_snp_filter callfix typo in building_your_pipeline.mdminimap2: fix single-end handlingupdate guide to build pipelinekallisto: fix output capturenf_modules: fix paired-single end handlingadd build_your_pipeline.md: with the 2 first steps of the guideREADME.md: add last update sectionCONTRIBUTING.md: add Forking definitiongetting_started.md: add link to building your pipeline guideCONTRIBUTING.md: fix typoCONTRIBUTING.md: add complex processes stepMerge remote-tracking branch 'origin/master'CONTRIBUTING.md: fix typoCONTRIBUTING.md: complet Docker partfastp: fix accel_s1plus protocolnextflow.config: change singualrity cacheDir for profile psmnbwa: fix variable name :46bwa: add missing { :52bwa: test if file_id is Mapbwa: new change and library defbwa: fix missing } :52bwa: handle dict as file_id for mapping_fastq