Commits · e4e83076fb4d1829431f875ed8a7e89401f60337 · Xavier Grand / ChIPster

Jul 13, 2020
- docker: add crossmap:0.4.1 · e4e83076
  Laurent Modolo authored 4 years ago
  
  e4e83076
- docker: add ucsc:400 · 4d4b9c97
  Laurent Modolo authored 4 years ago
  
  4d4b9c97
- docker: add bedops:2.4.39 · bda23695
  Laurent Modolo authored 4 years ago
  
  bda23695
Jul 08, 2020
- multiqc: fix psmn config files · 8094b470
  Laurent Modolo authored 4 years ago
  
  8094b470
Jul 07, 2020
- multiqc: add missing section in config file · 55c6c00b
  Laurent Modolo authored 4 years ago
  
  55c6c00b
Jun 30, 2020
- Merge remote-tracking branch 'origin/master' · 11a00225
  Laurent Modolo authored 4 years ago
  
  11a00225
- TP_experimental_biologists.md: improve lisibility · 0af18fba
  Laurent Modolo authored 4 years ago
  
  0af18fba
- docker: add freebayes 1.3.2 · a037e558
  Laurent Modolo authored 4 years ago
  
  a037e558
- docker: add bamutils 1.0.14 · cc105980
  Laurent Modolo authored 4 years ago
  
  cc105980
Jun 29, 2020
- nf_modules: fix cutadapt version · bb06add8
  Laurent Modolo authored 4 years ago
  
  bb06add8
- TP_experimental_biologists.md: fix tiny_dataset url · b27127cd
  Laurent Modolo authored 4 years ago
  
  b27127cd
- README.md: update git link · abf69fca
  Laurent Modolo authored 4 years ago
  
  abf69fca
Jun 02, 2020
- docker: add r4.0.0 · 04c020ae
  Laurent Modolo authored 4 years ago
  
  04c020ae
May 12, 2020
- docker: fix last:1060 module · aed09edd
  Laurent Modolo authored 4 years ago
  
  aed09edd
- docker: add r3.6.2 · b453de8a
  Laurent Modolo authored 4 years ago
  
  b453de8a
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 4 years ago
  
  87c79ae2
Apr 23, 2020
- docker: gatk3 increase java memory · 343b5dd4
  Laurent Modolo authored 4 years ago
  
  343b5dd4
Apr 21, 2020
- docker: add kallistobustools container · 172c6ed9
  Laurent Modolo authored 4 years ago
  
  172c6ed9
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 4 years ago
  
  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 4 years ago
  
  670315f5
- getting_started.md: update tiny_dataset path · 386b5699
  Laurent Modolo authored 4 years ago
  
  386b5699
Apr 17, 2020
- README.md: update link to new gitlab serveur · 4d18b9d7
  Laurent Modolo authored 4 years ago
  
  4d18b9d7
- TP_experimental_biologists.md: update link to new gitlab server · 571900c1
  Laurent Modolo authored 4 years ago
  
  571900c1
- add link to singularity shared folder at the psmn · 63d7665d
  Laurent Modolo authored 4 years ago
  
  63d7665d
- solution_RNASeq.config: first test config of singularity psmn · 876dc0ff
  Laurent Modolo authored 4 years ago
  
  876dc0ff
- update psmn config to new queues · c116038b
  Laurent Modolo authored 4 years ago
  
  c116038b
Mar 31, 2020
- t Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/nextflow · 193064fe
  Laurent Modolo authored 4 years ago
  
  the commit.
  193064fe
- Dockerfile: increase Xmx of java tools · d752181f
  Laurent Modolo authored 4 years ago
  
  d752181f
- solution_RNASeq.config: update config file for psmn · 75b6cf0e
  Laurent Modolo authored 4 years ago
  
  75b6cf0e
- RNASeq: rename solution of the practical · 7a2e76cd
  Laurent Modolo authored 4 years ago
  
  7a2e76cd
- RNASeq: add experimental biologists practical solution · 0a015caa
  Laurent Modolo authored 4 years ago
  
  0a015caa
- Merge branch 'master' of gitbio.ens-lyon.fr:pipelines/nextflow · 856e108c
  Laurent Modolo authored 4 years ago
  
  856e108c
Mar 30, 2020
- conda_envs: add link to gatk_3.8.0 · eae6b0e2
  Laurent Modolo authored 4 years ago
  
  eae6b0e2
Mar 27, 2020
- Picard: increase java default memory · 5a7f36eb
  Laurent Modolo authored 4 years ago
  
  5a7f36eb
- Dockerfile: last add script to bin · c2fd8aa4
  Laurent Modolo authored 4 years ago
  
  c2fd8aa4
- docker: add last version 1060 · 339a3a62
  Laurent Modolo authored 4 years ago
  
  339a3a62
Mar 25, 2020
- conda_envs: add link to bwa_0.7.17 · 5c3afc58
  Laurent Modolo authored 5 years ago
  
  5c3afc58
- conda_packages.sh: add bwa 0.7.17 · 1ee9f13e
  Laurent Modolo authored 5 years ago
  
  1ee9f13e
Mar 24, 2020
- Docker: gatk3 fix arguments parsing · 66cb84e1
  Laurent Modolo authored 5 years ago
  
  66cb84e1
- Dockerfile: gatk3 add gatk3 executable script · cadb073c
  Laurent Modolo authored 5 years ago
  
  cadb073c