Commits · df3d609e51c7617ec59069e5e4a1ce07b3372aa2 · Xavier Grand / ChIPster · GitLab

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Sep 20, 2018
- Updating forked nextflow · df3d609e
  nfontrod authored 6 years ago
  
  Merge branch 'master' of gitlab_lbmc:pipelines/nextflow
  df3d609e
- src/nf_modules/Hisat2/test/tests.sh : tests file · d2933d3f
  nfontrod authored 6 years ago
  
  d2933d3f
- src/nf_modules/Hisat2/test/bam_converter.nf : converting sam to bam · 1189b925
  nfontrod authored 6 years ago
  
  1189b925
- src/nf_modules/Hisat2/test/mapping_paired.nf : test mapping-PE · e4cefc2f
  nfontrod authored 6 years ago
  
  e4cefc2f
- src/nf_modules/Hisat2/test/mapping_single.nf : test mapping-SE · 519f8d1a
  nfontrod authored 6 years ago
  
  519f8d1a
- src/nf_modules/Hisat2/test/index.nf : test index creation · 4ea6d963
  nfontrod authored 6 years ago
  
  4ea6d963
- src/nf_modules/Hisat2/hisat2.config : nextflow configuration file for hista2 · cc5dda96
  nfontrod authored 6 years ago
  
  cc5dda96
- src/nf_modules/Hisat2/hisat2.nf : process nextflow for running hisat2 · 9ec9a8ad
  nfontrod authored 6 years ago
  
  9ec9a8ad
- src/docker_modules/HISAT2/2.0.0/Dockerfile : installing python to get the... · 0e1dda3a
  nfontrod authored 6 years ago
  
  src/docker_modules/HISAT2/2.0.0/Dockerfile : installing python to get the hsat2-build wrapper to work
  0e1dda3a
Sep 13, 2018
- Kallisto.nf: update report format · aac64942
  Laurent Modolo authored 6 years ago
  
  aac64942
Aug 31, 2018
- nf_modules: fix tests.sh to use local nextflow bin · 5386a286
  Laurent Modolo authored 6 years ago
  
  5386a286
- Kallisto: fix tests.sh · c43032e6
  Laurent Modolo authored 6 years ago
  
  c43032e6
Aug 29, 2018
- README.md: update MUSIC status · b49bed66
  Laurent Modolo authored 6 years ago
  
  b49bed66
- MUSIC: change read size param · 3bbe96f6
  Laurent Modolo authored 6 years ago
  
  3bbe96f6
- MUSIC: add tests.sh file to run the tests · cf94bb20
  Laurent Modolo authored 6 years ago
  
  cf94bb20
Aug 27, 2018
- training_dataset.nf: rename output · fb655dc5
  Laurent Modolo authored 6 years ago
  
  fb655dc5
- MUISC: .config: update config to match last single nf · 666d47e1
  Laurent Modolo authored 6 years ago
  
  666d47e1
- peak_calling_single.nf: select lp0 autoamtically · 51f89832
  Laurent Modolo authored 6 years ago
  
  51f89832
Aug 24, 2018
- training_dataset: add bam indexing step · 3bc22f3a
  Laurent Modolo authored 6 years ago
  
  3bc22f3a
- training_dataset.nf: fix filtering for single-end · 911287b2
  Laurent Modolo authored 6 years ago
  
  911287b2
- MUSIC: nf files for single-end data · 29267096
  Laurent Modolo authored 6 years ago
  
  29267096
- MUSIC: add samtools to the Dockerfile · 5f461c3d
  Laurent Modolo authored 6 years ago
  
  5f461c3d
Aug 23, 2018
- update CHANGELOG for v0.2.6 · 022639c1
  Laurent Modolo authored 6 years ago
  
  View commits for tag v0.2.6 v0.2.6
  
  022639c1
- training_dataset.nf: add command example in header · f842d100
  Laurent Modolo authored 6 years ago
  
  f842d100
- add pipeline to create training dataset · 6f2eec1e
  Laurent Modolo authored 6 years ago
  
  6f2eec1e
Aug 22, 2018
- README.md: update to account for new nf_module testing structure · 3e38d39c
  Laurent Modolo authored 6 years ago
  
  3e38d39c
- change CHANGELOG to markdown · f53e3251
  Laurent Modolo authored 6 years ago
  
  f53e3251
- Merge branch 'dev' · 139175cb
  Laurent Modolo authored 6 years ago
  
  View commits for tag v0.2.5 v0.2.5
  
  139175cb
- add changelog · 7aaaa9ed
  Laurent Modolo authored 6 years ago
  
  7aaaa9ed
- UrQt: update nf structure · 12e1d05a
  Laurent Modolo authored 6 years ago
  
  12e1d05a
- SRAtoolkit: update nf strcuture and improve script · 854a2a43
  Laurent Modolo authored 6 years ago
  
  854a2a43
- SAMtools: update nf structure · 67c4ff01
  Laurent Modolo authored 6 years ago
  
  67c4ff01
- RSEM: fix Dockerfile · eab4cb6b
  Laurent Modolo authored 6 years ago
  
  eab4cb6b
- RSEM: update nf structure · a4a0d6f0
  Laurent Modolo authored 6 years ago
  
  a4a0d6f0
- MultiQC: update nf structure · 927521d7
  Laurent Modolo authored 6 years ago
  
  927521d7
- Kallisto: update nf structure · 0c1bbd59
  Laurent Modolo authored 6 years ago
  
  0c1bbd59
- SAMtools: fix SGE config · 6ff0f7e2
  Laurent Modolo authored 6 years ago
  
  6ff0f7e2
- HTSeq: update nf structure · 0d1550a8
  Laurent Modolo authored 6 years ago
  
  0d1550a8
- FastQC: update nf structure · 419991ef
  Laurent Modolo authored 6 years ago
  
  419991ef
- Cutadapt: update nf structure · b5d57719
  Laurent Modolo authored 6 years ago
  
  b5d57719