Commits · 988c40208d299faeec9f4f63c504fe29763c13f1 · Xavier Grand / ChIPster · GitLab

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Jan 27, 2021
- picard: fix bams var in main.nf · 988c4020
  Laurent Modolo authored 4 years ago
  
  988c4020
Jan 25, 2021
- bedtools: add bam_id val · 9cc39469
  Laurent Modolo authored 4 years ago
  
  9cc39469
- samtools: fix filter_bam_mapped · e3a42082
  Laurent Modolo authored 4 years ago
  
  e3a42082
- bedtools: bam_to_fastq emits tuple · 30d17edc
  Laurent Modolo authored 4 years ago
  
  30d17edc
- bedtools: fix bam_to_fastq script · 8338d66f
  Laurent Modolo authored 4 years ago
  
  8338d66f
- bedtools: fix tags · 5d11f90e
  Laurent Modolo authored 4 years ago
  
  5d11f90e
- samtools: fix catched bams names · 9f34d846
  Laurent Modolo authored 4 years ago
  
  9f34d846
- samtools: fix samtools version · a8e8560a
  Laurent Modolo authored 4 years ago
  
  a8e8560a
- bedtools: fix output value name for bam_to_fastq_pairedend · 2e62b247
  Laurent Modolo authored 4 years ago
  
  2e62b247
- bedtools: change bam_to_fastq_pairedend name to be more consistant · 41651a7a
  Laurent Modolo authored 4 years ago
  
  41651a7a
- fix input and output for bedtools and samtools · 8bebb4a1
  Laurent Modolo authored 4 years ago
  
  8bebb4a1
- bedtools: add bam to fastq convertion · 70c7d906
  Laurent Modolo authored 4 years ago
  
  70c7d906
- samtools: nf_module add mapped and unmapped filter · de331fa7
  Laurent Modolo authored 4 years ago
  
  de331fa7
- sratoolkit: rename main module · ce4c569e
  Laurent Modolo authored 4 years ago
  
  ce4c569e
- nf_module: sratoolkit add DSL2 · 5bc80c3d
  Laurent Modolo authored 4 years ago
  
  5bc80c3d
Jan 22, 2021
- nf_modules: add deeptools to DSL2 · 7b298e92
  Laurent Modolo authored 4 years ago
  
  7b298e92
- nf_modules: add sambamba to DSL2 · 94c41f30
  Laurent Modolo authored 4 years ago
  
  94c41f30
- nf_modules: add samtools DSL2 · 3de89ded
  Laurent Modolo authored 4 years ago
  
  3de89ded
- nf_modules: add picard · a3d3e95b
  Laurent Modolo authored 4 years ago
  
  a3d3e95b
- nf_modules: multiqc add DSL2 · fe874785
  Laurent Modolo authored 4 years ago
  
  fe874785
- nf_modules: fastqc add DSL2 · f172f456
  Laurent Modolo authored 4 years ago
  
  f172f456
- nf_modules: masc2 add DSL2 · a12e9229
  Laurent Modolo authored 4 years ago
  
  a12e9229
- nf_modules: add bowtie to DSL2 · 829ff319
  Laurent Modolo authored 4 years ago
  
  829ff319
- nextflow.config: change queue list for psmn · 629de1ab
  Laurent Modolo authored 4 years ago
  
  629de1ab
- nextflow.config: add missing space :40 · 924256a1
  Laurent Modolo authored 4 years ago
  
  924256a1
- solution_RNASeq.nf: update to DSL2 · b60be324
  Laurent Modolo authored 4 years ago
  
  b60be324
- nf_module: set index to be the 2nd input for mapping · cecad357
  Laurent Modolo authored 4 years ago
  
  cecad357
Jan 20, 2021
- solution_RNASeq.nf: add command to launch pipeline · ad62a240
  Laurent Modolo authored 4 years ago
  
  ad62a240
- nf_modules: add kallisto to DSL2 · 6706a92d
  Laurent Modolo authored 4 years ago
  
  6706a92d
- nf_modules: add bedtools for DSL2 · b1f4bf87
  Laurent Modolo authored 4 years ago
  
  b1f4bf87
- nf_modules: add urqt for DSL2 · aefdae4d
  Laurent Modolo authored 4 years ago
  
  aefdae4d
- nf_modules: add DSL2 for cutadapt · 3490e2f1
  Laurent Modolo authored 4 years ago
  
  3490e2f1
- nextflow.config: add generic config file for module use · d3176121
  Laurent Modolo authored 4 years ago
  
  d3176121
- nf_modules: add DSL2 module for bowtie2 · 209cb4b1
  Laurent Modolo authored 4 years ago
  
  209cb4b1
- fix r-base 4.0.2 · 9b4d697a
  Laurent Modolo authored 4 years ago
  
  9b4d697a
Oct 09, 2020
- Merge remote-tracking branch 'refs/remotes/origin/master' into master · 4b4f0b3a
  Laurent Modolo authored 4 years ago
  
  4b4f0b3a
- nf_module update practical example to use withLabel instead of withName · 5cdad1d7
  Laurent Modolo authored 4 years ago
  
  5cdad1d7
- doc/TP_experimental_biologists.md updated · ff0af418
  Laurent Modolo authored 4 years ago
  
  ff0af418
Sep 09, 2020
- docker: fix r path in doker_init.sh · f318f0ff
  Laurent Modolo authored 4 years ago
  
  f318f0ff
- docker: add sabre 039a55e · 4c24548d
  Laurent Modolo authored 4 years ago
  
  4c24548d