Commits · 856e108c7f624c849aa0dcdeed2e7a7a3dcd94ce · Xavier Grand / ChIPster · GitLab

Snippets Groups Projects

Mar 30, 2020
- conda_envs: add link to gatk_3.8.0 · eae6b0e2
  Laurent Modolo authored 5 years ago
  
  eae6b0e2
Mar 27, 2020
- Picard: increase java default memory · 5a7f36eb
  Laurent Modolo authored 5 years ago
  
  5a7f36eb
- Dockerfile: last add script to bin · c2fd8aa4
  Laurent Modolo authored 5 years ago
  
  c2fd8aa4
- docker: add last version 1060 · 339a3a62
  Laurent Modolo authored 5 years ago
  
  339a3a62
Mar 25, 2020
- conda_envs: add link to bwa_0.7.17 · 5c3afc58
  Laurent Modolo authored 5 years ago
  
  5c3afc58
- conda_packages.sh: add bwa 0.7.17 · 1ee9f13e
  Laurent Modolo authored 5 years ago
  
  1ee9f13e
Mar 24, 2020
- Docker: gatk3 fix arguments parsing · 66cb84e1
  Laurent Modolo authored 5 years ago
  
  66cb84e1
- Dockerfile: gatk3 add gatk3 executable script · cadb073c
  Laurent Modolo authored 5 years ago
  
  cadb073c
Jan 17, 2020
- kallisto indexing.config: fix typo · 195e5ce1
  Laurent Modolo authored 5 years ago
  
  195e5ce1
- add RNASeq.config · 7c7984ec
  Laurent Modolo authored 5 years ago
  
  7c7984ec
- create RNASeq.nf · 99a62a30
  Laurent Modolo authored 5 years ago
  
  99a62a30
- fasta_sampler.nf: variable output name · e71dcd50
  Laurent Modolo authored 5 years ago
  
  e71dcd50
- get sample results · 6d8afaf1
  Laurent Modolo authored 5 years ago
  
  6d8afaf1
- create fasta_sampler.nf · fa5d3464
  Laurent Modolo authored 5 years ago
  
  fa5d3464
Jan 08, 2020
- umi_tools: Dockerfile, fix dependences · 6fa60ca9
  Laurent Modolo authored 5 years ago
  
  6fa60ca9
Dec 13, 2019
- cutadapt: config change version from 2.1 to 2.4 · 2b14934b
  Laurent Modolo authored 5 years ago
  
  2b14934b
- fasta_from_bed.config: remove ${CONDA_ENVS} · 05e1de4c
  Laurent Modolo authored 5 years ago
  
  05e1de4c
Dec 09, 2019
- psmn: fix gatk3.8.0 env name · b8dafbb8
  Laurent Modolo authored 5 years ago
  
  b8dafbb8
- docker: gatk3 fix licence problem · 9bf9ce0e
  Laurent Modolo authored 5 years ago
  
  9bf9ce0e
Dec 06, 2019
- conda: add psmn links · c30f9337
  Laurent Modolo authored 5 years ago
  
  c30f9337
- conda_packages.sh: add gatk4 · 46f9f194
  Laurent Modolo authored 5 years ago
  
  46f9f194
- docker_modules: add gatk3.8.0 · eb29dd1f
  Laurent Modolo authored 5 years ago
  
  eb29dd1f
Nov 28, 2019
- training_dataset.config: remove mail alert from ccin2p3 · 3efbbb5e
  Laurent Modolo authored 5 years ago
  
  3efbbb5e
- in2p3.pbs: fix work for nf · 42b7c647
  Laurent Modolo authored 5 years ago
  
  42b7c647
- training_dataset.config: add mail report · 4abd43f1
  Laurent Modolo authored 5 years ago
  
  4abd43f1
- singularity in2p3: fix symlink · 2e7b99ec
  Laurent Modolo authored 5 years ago
  
  2e7b99ec
- training_dataset.config: final fix for in2p3 cacheDir · 5a8a415b
  Laurent Modolo authored 5 years ago
  
  5a8a415b
- in2p3.pbs: fix files path · 40e33e80
  Laurent Modolo authored 5 years ago
  
  40e33e80
- .update_config.sh: fix singularity cacheDir path for in2p3 · 746d0619
  Laurent Modolo authored 5 years ago
  
  746d0619
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
  30b52060
- training_dataset.config: fix cacheDir for singularity in2p3 · 75b8a82d
  Laurent Modolo authored 5 years ago
  
  75b8a82d
- in2p3.pbs: update pbs to use training_dataset.nf · 2a00f4d5
  Laurent Modolo authored 5 years ago
  
  2a00f4d5
- in2p3.pbs: update nextflow vertion to 19.10 · 036e8214
  Laurent Modolo authored 5 years ago
  
  036e8214
- training_dataset.config: add ccin2p3 section · 656b8f8d
  Laurent Modolo authored 5 years ago
  
  656b8f8d
Nov 27, 2019
- .update_config.sh: exclude nf module from singularity update · b905d301
  Laurent Modolo authored 5 years ago
  
  b905d301
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
  32312418
- add .signularity_in2p3 folder to fix lock problem in nf · 3192a86d
  Laurent Modolo authored 5 years ago
  
  3192a86d
Nov 22, 2019
- psmn: test of new symlink structure for conda env · 3a681558
  Laurent Modolo authored 5 years ago
  
  3a681558
- psmn: add ribotish_0.2.4 · ea7618fc
  Laurent Modolo authored 5 years ago
  
  ea7618fc
- src/ cleanup .pbs example · 94a24ded
  Laurent Modolo authored 5 years ago
  
  94a24ded