Commits · 6fa60ca99b00a05e6a4b2f49f57279a71f8680d7 · Xavier Grand / ChIPster · GitLab

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Jan 08, 2020
- umi_tools: Dockerfile, fix dependences · 6fa60ca9
  Laurent Modolo authored 5 years ago
  
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  6fa60ca9
Dec 13, 2019
- cutadapt: config change version from 2.1 to 2.4 · 2b14934b
  Laurent Modolo authored 5 years ago
  
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  2b14934b
- fasta_from_bed.config: remove ${CONDA_ENVS} · 05e1de4c
  Laurent Modolo authored 5 years ago
  
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  05e1de4c
Dec 09, 2019
- psmn: fix gatk3.8.0 env name · b8dafbb8
  Laurent Modolo authored 5 years ago
  
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  b8dafbb8
- docker: gatk3 fix licence problem · 9bf9ce0e
  Laurent Modolo authored 5 years ago
  
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  9bf9ce0e
Dec 06, 2019
- conda: add psmn links · c30f9337
  Laurent Modolo authored 5 years ago
  
  c30f9337
- conda_packages.sh: add gatk4 · 46f9f194
  Laurent Modolo authored 5 years ago
  
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  46f9f194
- docker_modules: add gatk3.8.0 · eb29dd1f
  Laurent Modolo authored 5 years ago
  
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  eb29dd1f
Nov 28, 2019
- training_dataset.config: remove mail alert from ccin2p3 · 3efbbb5e
  Laurent Modolo authored 5 years ago
  
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  3efbbb5e
- in2p3.pbs: fix work for nf · 42b7c647
  Laurent Modolo authored 5 years ago
  
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  42b7c647
- training_dataset.config: add mail report · 4abd43f1
  Laurent Modolo authored 5 years ago
  
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  4abd43f1
- singularity in2p3: fix symlink · 2e7b99ec
  Laurent Modolo authored 5 years ago
  
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  2e7b99ec
- training_dataset.config: final fix for in2p3 cacheDir · 5a8a415b
  Laurent Modolo authored 5 years ago
  
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  5a8a415b
- in2p3.pbs: fix files path · 40e33e80
  Laurent Modolo authored 5 years ago
  
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  40e33e80
- .update_config.sh: fix singularity cacheDir path for in2p3 · 746d0619
  Laurent Modolo authored 5 years ago
  
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  746d0619
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
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  30b52060
- training_dataset.config: fix cacheDir for singularity in2p3 · 75b8a82d
  Laurent Modolo authored 5 years ago
  
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  75b8a82d
- in2p3.pbs: update pbs to use training_dataset.nf · 2a00f4d5
  Laurent Modolo authored 5 years ago
  
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  2a00f4d5
- in2p3.pbs: update nextflow vertion to 19.10 · 036e8214
  Laurent Modolo authored 5 years ago
  
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  036e8214
- training_dataset.config: add ccin2p3 section · 656b8f8d
  Laurent Modolo authored 5 years ago
  
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  656b8f8d
Nov 27, 2019
- .update_config.sh: exclude nf module from singularity update · b905d301
  Laurent Modolo authored 5 years ago
  
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  b905d301
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
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  32312418
- add .signularity_in2p3 folder to fix lock problem in nf · 3192a86d
  Laurent Modolo authored 5 years ago
  
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  3192a86d
Nov 22, 2019
- psmn: test of new symlink structure for conda env · 3a681558
  Laurent Modolo authored 5 years ago
  
  3a681558
- psmn: add ribotish_0.2.4 · ea7618fc
  Laurent Modolo authored 5 years ago
  
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  ea7618fc
- src/ cleanup .pbs example · 94a24ded
  Laurent Modolo authored 5 years ago
  
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  94a24ded
Nov 20, 2019
- docker: fix ucsc img · 2835b4b2
  Laurent Modolo authored 5 years ago
  
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  2835b4b2
- psmn: add axtchain_377 · a555e942
  Laurent Modolo authored 5 years ago
  
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  a555e942
- psmn: add liftover_357 · 5615c454
  Laurent Modolo authored 5 years ago
  
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  5615c454
- singularity: remove module as they are pulled from docker since 0.4.0 · e4c29f64
  Laurent Modolo authored 5 years ago
  
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  e4c29f64
- docker: add liftover:357 · 4184614b
  Laurent Modolo authored 5 years ago
  
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  4184614b
- docker: change FROM url to add lbmc/ prefix · aa85921f
  Laurent Modolo authored 5 years ago
  
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  aa85921f
- docker: change FROM url to add lbmc/ prefix · 81768be1
  Laurent Modolo authored 5 years ago
  
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  81768be1
- update docker script for v0.4.0 to automatise push · 7064340c
  Laurent Modolo authored 5 years ago
  
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  7064340c
- update docker script for v0.4.0 · 28cb6941
  Laurent Modolo authored 5 years ago
  
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  28cb6941
- docker_files: fix sambamba · c2fad6c0
  Laurent Modolo authored 5 years ago
  
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  c2fad6c0
- nf_modules: add STAR · 4ff7d565
  Laurent Modolo authored 5 years ago
  
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  4ff7d565
- update docker script for v0.4.0 · a037caea
  Laurent Modolo authored 5 years ago
  
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  a037caea
- docker_files: add star · b6f00cb0
  Laurent Modolo authored 5 years ago
  
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  b6f00cb0
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
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  4734f32a