Commits · 571900c19f7b45961560f7df76d160f8e077111b · Xavier Grand / ChIPster · GitLab

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Apr 17, 2020
- TP_experimental_biologists.md: update link to new gitlab server · 571900c1
  Laurent Modolo authored 4 years ago
  
  571900c1
- add link to singularity shared folder at the psmn · 63d7665d
  Laurent Modolo authored 4 years ago
  
  63d7665d
- solution_RNASeq.config: first test config of singularity psmn · 876dc0ff
  Laurent Modolo authored 4 years ago
  
  876dc0ff
- update psmn config to new queues · c116038b
  Laurent Modolo authored 4 years ago
  
  c116038b
Mar 31, 2020
- t Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/nextflow · 193064fe
  Laurent Modolo authored 4 years ago
  
  the commit.
  193064fe
- Dockerfile: increase Xmx of java tools · d752181f
  Laurent Modolo authored 4 years ago
  
  d752181f
- solution_RNASeq.config: update config file for psmn · 75b6cf0e
  Laurent Modolo authored 4 years ago
  
  75b6cf0e
- RNASeq: rename solution of the practical · 7a2e76cd
  Laurent Modolo authored 4 years ago
  
  7a2e76cd
- RNASeq: add experimental biologists practical solution · 0a015caa
  Laurent Modolo authored 4 years ago
  
  0a015caa
- Merge branch 'master' of gitbio.ens-lyon.fr:pipelines/nextflow · 856e108c
  Laurent Modolo authored 4 years ago
  
  856e108c
Mar 30, 2020
- conda_envs: add link to gatk_3.8.0 · eae6b0e2
  Laurent Modolo authored 4 years ago
  
  eae6b0e2
Mar 27, 2020
- Picard: increase java default memory · 5a7f36eb
  Laurent Modolo authored 4 years ago
  
  5a7f36eb
- Dockerfile: last add script to bin · c2fd8aa4
  Laurent Modolo authored 4 years ago
  
  c2fd8aa4
- docker: add last version 1060 · 339a3a62
  Laurent Modolo authored 4 years ago
  
  339a3a62
Mar 25, 2020
- conda_envs: add link to bwa_0.7.17 · 5c3afc58
  Laurent Modolo authored 4 years ago
  
  5c3afc58
- conda_packages.sh: add bwa 0.7.17 · 1ee9f13e
  Laurent Modolo authored 4 years ago
  
  1ee9f13e
Mar 24, 2020
- Docker: gatk3 fix arguments parsing · 66cb84e1
  Laurent Modolo authored 4 years ago
  
  66cb84e1
- Dockerfile: gatk3 add gatk3 executable script · cadb073c
  Laurent Modolo authored 4 years ago
  
  cadb073c
Feb 07, 2020
- Merge branch 'elabaron/nextflow-master' into dev · 0df90258
  Laurent Modolo authored 5 years ago
  
  0df90258
Jan 17, 2020
- kallisto indexing.config: fix typo · 195e5ce1
  Laurent Modolo authored 5 years ago
  
  195e5ce1
- add RNASeq.config · 7c7984ec
  Laurent Modolo authored 5 years ago
  
  7c7984ec
- create RNASeq.nf · 99a62a30
  Laurent Modolo authored 5 years ago
  
  99a62a30
- fasta_sampler.nf: variable output name · e71dcd50
  Laurent Modolo authored 5 years ago
  
  e71dcd50
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · 09bd9862
  Laurent Modolo authored 5 years ago
  
  09bd9862
- TP_experimental_biologists.md fix url typo · f1ca9e09
  Laurent Modolo authored 5 years ago
  
  f1ca9e09
- get sample results · 6d8afaf1
  Laurent Modolo authored 5 years ago
  
  6d8afaf1
- create fasta_sampler.nf · fa5d3464
  Laurent Modolo authored 5 years ago
  
  fa5d3464
Jan 13, 2020
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · efc06486
  Laurent Modolo authored 5 years ago
  
  efc06486
- update mail message · 14ff8205
  Laurent Modolo authored 5 years ago
  
  14ff8205
Jan 08, 2020
- umi_tools: Dockerfile, fix dependences · 6fa60ca9
  Laurent Modolo authored 5 years ago
  
  6fa60ca9
Jan 07, 2020
- TP_experimental_biologists.md: add login information · f10df508
  Laurent Modolo authored 5 years ago
  
  f10df508
Dec 13, 2019
- cutadapt: config change version from 2.1 to 2.4 · 2b14934b
  Laurent Modolo authored 5 years ago
  
  2b14934b
- fasta_from_bed.config: remove ${CONDA_ENVS} · 05e1de4c
  Laurent Modolo authored 5 years ago
  
  05e1de4c
Dec 09, 2019
- update TP_experimental_biologists.md with pipe 0.4.0 · 1eb1809e
  Laurent Modolo authored 5 years ago
  
  1eb1809e
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · ceb966cb
  Laurent Modolo authored 5 years ago
  
  ceb966cb
- update mail.txt · a0256b9e
  Laurent Modolo authored 5 years ago
  
  a0256b9e
- psmn: fix gatk3.8.0 env name · b8dafbb8
  Laurent Modolo authored 5 years ago
  
  b8dafbb8
- docker: gatk3 fix licence problem · 9bf9ce0e
  Laurent Modolo authored 5 years ago
  
  9bf9ce0e
Dec 06, 2019
- MERGE · d3042117
  Laurent Modolo authored 5 years ago
  
  d3042117
- conda: add psmn links · c30f9337
  Laurent Modolo authored 5 years ago
  
  c30f9337