Commits · 51a1d4dc4cd01d93bc408999adc778b4583b4f78 · Xavier Grand / ChIPster · GitLab

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Apr 16, 2021
- getting_started.md: add link to building your pipeline guide · 51a1d4dc
  Laurent Modolo authored 3 years ago
  
  51a1d4dc
- CONTRIBUTING.md: fix typo · 3907181b
  Laurent Modolo authored 3 years ago
  
  3907181b
- CONTRIBUTING.md: add complex processes step · b927e7f7
  Laurent Modolo authored 3 years ago
  
  b927e7f7
Apr 15, 2021
- Merge remote-tracking branch 'origin/master' · 1fed060f
  Laurent Modolo authored 3 years ago
  
  1fed060f
- CONTRIBUTING.md: fix typo · 46bc2524
  Laurent Modolo authored 3 years ago
  
  46bc2524
- CONTRIBUTING.md: complet Docker part · 231548b1
  Laurent Modolo authored 3 years ago
  
  231548b1
- fastp: fix accel_s1plus protocol · 8e1543d2
  Laurent Modolo authored 3 years ago
  
  8e1543d2
- nextflow.config: change singualrity cacheDir for profile psmn · a7b03ba6
  Laurent Modolo authored 3 years ago
  
  a7b03ba6
- bwa: fix variable name :46 · bca33ec1
  Laurent Modolo authored 3 years ago
  
  bca33ec1
- bwa: add missing { :52 · 41ae8c2e
  Laurent Modolo authored 3 years ago
  
  41ae8c2e
- bwa: test if file_id is Map · c6be6b39
  Laurent Modolo authored 3 years ago
  
  c6be6b39
- bwa: new change and library def · 34b4db9d
  Laurent Modolo authored 3 years ago
  
  34b4db9d
- bwa: fix missing } :52 · fe818588
  Laurent Modolo authored 3 years ago
  
  fe818588
- bwa: handle dict as file_id for mapping_fastq · 1de16f9a
  Laurent Modolo authored 3 years ago
  
  1de16f9a
- bowtie2: fix missing variable :49 · b5b2bda7
  Laurent Modolo authored 3 years ago
  
  b5b2bda7
- bwa: change index and fastq order for mapping · e3de37bc
  Laurent Modolo authored 3 years ago
  
  e3de37bc
- picard: add publishDir option · f5691c89
  Laurent Modolo authored 3 years ago
  
  f5691c89
- bwa: fix library variable definition · e13bd1eb
  Laurent Modolo authored 3 years ago
  
  e13bd1eb
- bwa: fix typo in index_fasta · edd36c5b
  Laurent Modolo authored 3 years ago
  
  edd36c5b
- samtools: update publishDir directives · c6944a8e
  Laurent Modolo authored 3 years ago
  
  c6944a8e
- nf_modules: fix bug in variable names for samtools and bwa · c75f1dda
  Laurent Modolo authored 3 years ago
  
  c75f1dda
- nf_modules: update last main.nf to change in CONTRIBUTING.md · fdb5acb8
  Laurent Modolo authored 3 years ago
  
  fdb5acb8
Apr 14, 2021
- CONTRIBUTING.md: add info on channel creation · dbbbac30
  Laurent Modolo authored 3 years ago
  
  dbbbac30
- bwa: update to match CONTRIBUTING.md · c6dce992
  Laurent Modolo authored 3 years ago
  
  c6dce992
- bowtie: update to match CONTRIBUTING.md · b867bf9a
  Laurent Modolo authored 3 years ago
  
  b867bf9a
- fastp: update accel_s1plus protocol · 1f72b2c4
  Laurent Modolo authored 3 years ago
  
  1f72b2c4
- samtools: update to follow CONTRIBUTING.md · 84daa858
  Laurent Modolo authored 3 years ago
  
  84daa858
- bowtie2: replace pair_id by file_id · 7c1e0c6c
  Laurent Modolo authored 3 years ago
  
  7c1e0c6c
- bowtie2: fix input tuple :45 · 5de7aac6
  Laurent Modolo authored 3 years ago
  
  5de7aac6
- bowtie2: update to match contributing.md · fd494cd5
  Laurent Modolo authored 3 years ago
  
  fd494cd5
- nf_modules: update module from g2gtools to multiqc to match the CONTRIBUTING.md · 8afe54bb
  Laurent Modolo authored 3 years ago
  
  8afe54bb
- fastp: fix variable name in fastp_accel_1splus · 9c9cf82d
  Laurent Modolo authored 3 years ago
  
  9c9cf82d
- mv PSMN singularity img to /Xnfs/abc/singularity/ · 9365b6e3
  Laurent Modolo authored 3 years ago
  
  9365b6e3
- CONTRIBUTING.md: end of the nf_modules section · 020a69e4
  Laurent Modolo authored 3 years ago
  
  020a69e4
- fastp: update fastp to match CONTRIBUTING.md · 2924d6ef
  Laurent Modolo authored 3 years ago
  
  2924d6ef
- kallisto: update script to match CONTRIBUTING.md · be4657c7
  Laurent Modolo authored 3 years ago
  
  be4657c7
- kallisto: fix warning in mapping_fastq about single-end parameters · 6f027a2e
  Laurent Modolo authored 3 years ago
  
  6f027a2e
Apr 13, 2021
- CONTRIBUTING.md: start to rewrite new instruction with DSL2 · 87dbf344
  Laurent Modolo authored 3 years ago
  
  87dbf344
- update solution_RNASeq.nf to match CONTRIBUTING.md · 8b70de28
  Laurent Modolo authored 3 years ago
  
  8b70de28
- bedtools: fix typo :19 · bc81c837
  Laurent Modolo authored 3 years ago
  
  bc81c837