Commits · 2e62b2475c4364628eb00fa0f4895b827cf3d63e · Xavier Grand / ChIPster · GitLab

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Jan 25, 2021
- bedtools: fix output value name for bam_to_fastq_pairedend · 2e62b247
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  2e62b247
- bedtools: change bam_to_fastq_pairedend name to be more consistant · 41651a7a
  Laurent Modolo authored 4 years ago
  
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  41651a7a
- fix input and output for bedtools and samtools · 8bebb4a1
  Laurent Modolo authored 4 years ago
  
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  8bebb4a1
- bedtools: add bam to fastq convertion · 70c7d906
  Laurent Modolo authored 4 years ago
  
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  70c7d906
- samtools: nf_module add mapped and unmapped filter · de331fa7
  Laurent Modolo authored 4 years ago
  
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  de331fa7
- sratoolkit: rename main module · ce4c569e
  Laurent Modolo authored 4 years ago
  
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  ce4c569e
- nf_module: sratoolkit add DSL2 · 5bc80c3d
  Laurent Modolo authored 4 years ago
  
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  5bc80c3d
Jan 22, 2021
- nf_modules: add deeptools to DSL2 · 7b298e92
  Laurent Modolo authored 4 years ago
  
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  7b298e92
- nf_modules: add sambamba to DSL2 · 94c41f30
  Laurent Modolo authored 4 years ago
  
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  94c41f30
- nf_modules: add samtools DSL2 · 3de89ded
  Laurent Modolo authored 4 years ago
  
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  3de89ded
- nf_modules: add picard · a3d3e95b
  Laurent Modolo authored 4 years ago
  
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  a3d3e95b
- nf_modules: multiqc add DSL2 · fe874785
  Laurent Modolo authored 4 years ago
  
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  fe874785
- nf_modules: fastqc add DSL2 · f172f456
  Laurent Modolo authored 4 years ago
  
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  f172f456
- nf_modules: masc2 add DSL2 · a12e9229
  Laurent Modolo authored 4 years ago
  
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  a12e9229
- nf_modules: add bowtie to DSL2 · 829ff319
  Laurent Modolo authored 4 years ago
  
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  829ff319
- nextflow.config: change queue list for psmn · 629de1ab
  Laurent Modolo authored 4 years ago
  
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  629de1ab
- nextflow.config: add missing space :40 · 924256a1
  Laurent Modolo authored 4 years ago
  
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  924256a1
- solution_RNASeq.nf: update to DSL2 · b60be324
  Laurent Modolo authored 4 years ago
  
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  b60be324
- nf_module: set index to be the 2nd input for mapping · cecad357
  Laurent Modolo authored 4 years ago
  
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  cecad357
Jan 20, 2021
- solution_RNASeq.nf: add command to launch pipeline · ad62a240
  Laurent Modolo authored 4 years ago
  
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  ad62a240
- nf_modules: add kallisto to DSL2 · 6706a92d
  Laurent Modolo authored 4 years ago
  
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  6706a92d
- nf_modules: add bedtools for DSL2 · b1f4bf87
  Laurent Modolo authored 4 years ago
  
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  b1f4bf87
- nf_modules: add urqt for DSL2 · aefdae4d
  Laurent Modolo authored 4 years ago
  
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  aefdae4d
- nf_modules: add DSL2 for cutadapt · 3490e2f1
  Laurent Modolo authored 4 years ago
  
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  3490e2f1
- nextflow.config: add generic config file for module use · d3176121
  Laurent Modolo authored 4 years ago
  
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  d3176121
- nf_modules: add DSL2 module for bowtie2 · 209cb4b1
  Laurent Modolo authored 4 years ago
  
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  209cb4b1
- fix r-base 4.0.2 · 9b4d697a
  Laurent Modolo authored 4 years ago
  
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  9b4d697a
Oct 09, 2020
- Merge remote-tracking branch 'refs/remotes/origin/master' into master · 4b4f0b3a
  Laurent Modolo authored 4 years ago
  
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  4b4f0b3a
- nf_module update practical example to use withLabel instead of withName · 5cdad1d7
  Laurent Modolo authored 4 years ago
  
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  5cdad1d7
- doc/TP_experimental_biologists.md updated · ff0af418
  Laurent Modolo authored 4 years ago
  
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  ff0af418
Sep 09, 2020
- docker: fix r path in doker_init.sh · f318f0ff
  Laurent Modolo authored 4 years ago
  
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  f318f0ff
- docker: add sabre 039a55e · 4c24548d
  Laurent Modolo authored 4 years ago
  
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  4c24548d
Aug 31, 2020
- docker: mv r folder to r-base folder to be consistent with img names · fcb7af24
  Laurent Modolo authored 4 years ago
  
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  fcb7af24
- docker: add r-base 4.0.2 · 0415e251
  Laurent Modolo authored 4 years ago
  
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  0415e251
Aug 17, 2020
- docker: add bash to g2gtools:0.2.8 · 62c9c2ea
  Laurent Modolo authored 4 years ago
  
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  62c9c2ea
- docker: add bash to g2gtools:0.2.7 · 45e909cd
  Laurent Modolo authored 4 years ago
  
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  45e909cd
- gffread: fix missing \ in Dockerfile · a61d4601
  Laurent Modolo authored 4 years ago
  
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  a61d4601
Jul 24, 2020
- docker: add bash to gffread:0.11.8 · 92007b4a
  Laurent Modolo authored 4 years ago
  
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  92007b4a
- docker: add gffread:0.11.8 · 48c10de5
  Laurent Modolo authored 4 years ago
  
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  48c10de5
Jul 20, 2020
- docker: add kallistobustools:0.39.3 with t2g.py · 26a87183
  Laurent Modolo authored 4 years ago
  
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  26a87183