Commits · 2c488dbfc63f5c1c2f53febe4345ce0ca4607c02 · Xavier Grand / ChIPster

01 Jun, 2018 1 commit
- cutadapt: add tests and config · 2c488dbf
  Laurent Modolo authored Jun 01, 2018
  
  2c488dbf
31 May, 2018 13 commits
- cutadapt.config: add config file for docker · ae7f6a84
  Laurent Modolo authored May 31, 2018
  
  ae7f6a84
- cutadapt.nf: add trimming script · 9ae3505c
  Laurent Modolo authored May 31, 2018
  
  9ae3505c
- cutadapt.nf: adaptator trimming code for paired and single-ends · aafb78a0
  Laurent Modolo authored May 31, 2018
  
  aafb78a0
- CONTRIBUTING.md : add temporary guide · d2301953
  Laurent Modolo authored May 31, 2018
  
  d2301953
- README.md : add installation guide · 082ba1ec
  Laurent Modolo authored May 31, 2018
  
  082ba1ec
- UrQt/d62c1f8: add docker files · 083ce11c
  Laurent Modolo authored May 31, 2018
  
  083ce11c
- add README · aa6e9610
  Laurent Modolo authored May 31, 2018
  
  aa6e9610
- Add LICENSE · 89f0cbf7
  Laurent Modolo authored May 31, 2018
  
  89f0cbf7
- Delete LICENSE · d1ef29e6
  Laurent Modolo authored May 31, 2018
  
  d1ef29e6
- Add CHANGELOG · 906ce574
  Laurent Modolo authored May 31, 2018
  
  906ce574
- Add contribution guide · b75d7bf7
  Laurent Modolo authored May 31, 2018
  
  b75d7bf7
- RSEM/1.3.0: add docker files · 211d7cd7
  Laurent Modolo authored May 31, 2018
  
  211d7cd7
- update sge_module · 149a6531
  Laurent Modolo authored May 31, 2018
  
  149a6531
30 May, 2018 6 commits
- Salmon/0.8.2: add docker files · a2ddd33f
  Laurent Modolo authored May 30, 2018
  
  a2ddd33f
- MultiQC/1.0: add docker files · 65508b53
  Laurent Modolo authored May 30, 2018
  
  65508b53
- Trimmomatic/0.36: add docker files · deb2e053
  Laurent Modolo authored May 30, 2018
  
  deb2e053
- deepTools/3.0.2: add docker files · 950416c3
  Laurent Modolo authored May 30, 2018
  
  950416c3
- HTSeq/0.8.0: add docker files · bf9c81d8
  Laurent Modolo authored May 30, 2018
  
  bf9c81d8
- Kallisto/0.43.1: install file for docker · 7bb1e1d0
  Laurent Modolo authored May 30, 2018
  
  7bb1e1d0
25 May, 2018 17 commits
- .gitignore: ignore nextflow logs · e7d8a2da
  Laurent Modolo authored May 25, 2018
  
  e7d8a2da
- add docker files for file_handle:0.1.1 · d533b0bf
  Laurent Modolo authored May 25, 2018
  
  d533b0bf
- add docker files for pigz · 8fc035f3
  Laurent Modolo authored May 25, 2018
  
  8fc035f3
- add docker files for canu:1.6 · ff8b0cd9
  Laurent Modolo authored May 25, 2018
  
  ff8b0cd9
- add docker files for tophat:2.1.1 · b9c08af5
  Laurent Modolo authored May 25, 2018
  
  b9c08af5
- add docker files for SRAtoolkit:2.8.2 · 3631e459
  Laurent Modolo authored May 25, 2018
  
  3631e459
- add docker files for samtools:1.7 · 2411ee58
  Laurent Modolo authored May 25, 2018
  
  2411ee58
- docker files for FastQC:0.11.5 · bdceaf98
  Laurent Modolo authored May 25, 2018
  
  bdceaf98
- add dockerfile for Bowtie2:2.3.4.1 · e6a0253b
  Laurent Modolo authored May 25, 2018
  
  e6a0253b
- add Dockerfile for bedtools:2.25.0 · 1ee5f69e
  Laurent Modolo authored May 25, 2018
  
  1ee5f69e
- add sge submodules · be13637e
  Laurent Modolo authored May 25, 2018
  
  be13637e
- add doc directory · 17863439
  Laurent Modolo authored May 25, 2018
  
  17863439
- mv install_nextflow.sh to src/ · 4918b533
  Laurent Modolo authored May 25, 2018
  
  4918b533
- add data and results directory · 8f34bbf7
  Laurent Modolo authored May 25, 2018
  
  8f34bbf7
- .gitignore: ignore nextflow outputs · ca5ea24a
  Laurent Modolo authored May 25, 2018
  
  ca5ea24a
- add install_nextflow.sh script · 1f3df132
  Laurent Modolo authored May 25, 2018
  
  1f3df132
- add license · 1d8193da
  Laurent Modolo authored May 25, 2018
  
  1d8193da