samtools: test for indexing

ed50e0a0 · Laurent Modolo · 28a831bf · ed50e0a0
Verified Commit ed50e0a0 authored 4 years ago by Laurent Modolo
--- a/src/nf_modules/samtools/main.nf
+++ b/src/nf_modules/samtools/main.nf
@@ -62,7 +62,8 @@ process index_bam {
    tuple val(file_id), path(bam)
  output:
-    tuple val(file_id), path("*.bam*"), emit: bam
+    tuple val(file_id), path(bam), emit: bam
+    tuple val(file_id), path("*.bam*"), emit: bam_idx
  script:
 """