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Verified Commit c251a789 authored by Laurent Modolo's avatar Laurent Modolo
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g2gtools: add vci_build process

parent 3ea4e9e6
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version = "0.2.8"
container_url = "lbmc/g2gtools:${version}"
process vci_build {
container = "${container_url}"
label "big_mem_multi_cpus"
tag "$file_id"
input:
tuple val(file_id), path(vcf)
tuple val(ref_id), path(fasta), path(fai), path(dict)
output:
tuple val(file_id), path("*.chain"), emit: vci
script:
"""
g2gtools vcf2vci \
-p ${task.cpus} \
-f ${fasta} \
-i ${vcf} \
-s ${file_id} \
-o ${file_id}.vci
"""
}
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