Skip to content
Snippets Groups Projects
Verified Commit c09d0f5c authored by Laurent Modolo's avatar Laurent Modolo
Browse files

nextflow.pbs: change NF parameters order

parent bf418ede
Branches
Tags
No related merge requests found
#!/bin/sh #! /usr/local/bin/bash -l
##################################### #####################################
# job script example with GE options # job script example with GE options
##################################### #####################################
...@@ -20,8 +20,8 @@ PIPELINE=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.nf ...@@ -20,8 +20,8 @@ PIPELINE=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.nf
CONFIG=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.config CONFIG=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.config
OPTIONx="--fasta \"data/tiny_dataset/fasta/tiny_v2.fasta\"" OPTIONx="--fasta \"data/tiny_dataset/fasta/tiny_v2.fasta\""
time $NF \ $NF \
-profile ccin2p3_conda \
$PIPELINE \ $PIPELINE \
-c $CONFIG \ -c $CONFIG \
-profile ccin2p3_conda \
$OPTIONS $OPTIONS
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment