Commit b04822b5 authored by nfontrod's avatar nfontrod
Browse files

Rnaseq.config : docker config for adaptor_removal process

parent ce348ae2
profiles {
docker {
docker.temp = 'auto'
docker.enabled = true
process {
$adaptor_removal {
container = "cutadapt:1.14"
}
}
}
sge {
process{
$adaptor_removal {
beforeScript = "module purge; module load cutadapt/1.14"
executor = "sge"
cpus = 1
memory = "5GB"
time = "6h"
queueSize = 1000
pollInterval = '60sec'
queue = 'h6-E5-2667v4deb128'
penv = 'openmp8'
}
}
}
}
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