Merge branch 'Delattre/JU28_59vs17_SNP-master' into dev to get BWA GATK...
Merge branch 'Delattre/JU28_59vs17_SNP-master' into dev to get BWA GATK sambamba samblaster and bcftools
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- .gitignore 1 addition, 0 deletions.gitignore
- results/.gitignore 0 additions, 1 deletionresults/.gitignore
- src/docker_modules/BWA/0.7.17/Dockerfile 30 additions, 0 deletionssrc/docker_modules/BWA/0.7.17/Dockerfile
- src/docker_modules/BWA/0.7.17/docker_init.sh 2 additions, 0 deletionssrc/docker_modules/BWA/0.7.17/docker_init.sh
- src/docker_modules/GATK/4.0.8.1/Dockerfile 6 additions, 0 deletionssrc/docker_modules/GATK/4.0.8.1/Dockerfile
- src/docker_modules/GATK/4.0.8.1/docker_init.sh 2 additions, 0 deletionssrc/docker_modules/GATK/4.0.8.1/docker_init.sh
- src/docker_modules/bcftools/1.7/Dockerfile 9 additions, 0 deletionssrc/docker_modules/bcftools/1.7/Dockerfile
- src/docker_modules/bcftools/1.7/docker_init.sh 2 additions, 0 deletionssrc/docker_modules/bcftools/1.7/docker_init.sh
- src/docker_modules/bioawk/1.0/Dockerfile 21 additions, 0 deletionssrc/docker_modules/bioawk/1.0/Dockerfile
- src/docker_modules/bioawk/1.0/docker_init.sh 2 additions, 0 deletionssrc/docker_modules/bioawk/1.0/docker_init.sh
- src/docker_modules/sambamba/0.6.7/Dockerfile 17 additions, 0 deletionssrc/docker_modules/sambamba/0.6.7/Dockerfile
- src/docker_modules/sambamba/0.6.7/docker_init.sh 2 additions, 0 deletionssrc/docker_modules/sambamba/0.6.7/docker_init.sh
- src/docker_modules/samblaster/0.1.24/Dockerfile 20 additions, 0 deletionssrc/docker_modules/samblaster/0.1.24/Dockerfile
- src/docker_modules/samblaster/0.1.24/docker_init.sh 2 additions, 0 deletionssrc/docker_modules/samblaster/0.1.24/docker_init.sh
- src/nf_modules/BWA/indexing.config 26 additions, 0 deletionssrc/nf_modules/BWA/indexing.config
- src/nf_modules/BWA/indexing.nf 29 additions, 0 deletionssrc/nf_modules/BWA/indexing.nf
- src/nf_modules/BWA/mapping_paired.config 26 additions, 0 deletionssrc/nf_modules/BWA/mapping_paired.config
- src/nf_modules/BWA/mapping_paired.nf 38 additions, 0 deletionssrc/nf_modules/BWA/mapping_paired.nf
- src/nf_modules/BWA/tests.sh 17 additions, 0 deletionssrc/nf_modules/BWA/tests.sh
- src/nf_modules/sambamba/index_bams.config 18 additions, 0 deletionssrc/nf_modules/sambamba/index_bams.config
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