docker: add samtools v1.11

src/.docker_modules/samtools/1.11/Dockerfile

+FROM alpine:3.8
+MAINTAINER Laurent Modolo
+
+ENV SAMTOOLS_VERSION=1.11
+ENV PACKAGES git \
+             make \
+             gcc \
+             musl-dev \
+             zlib-dev \
+             ncurses-dev \
+             bzip2-dev \
+             xz-dev \
+             curl-dev \
+             bash
+
+RUN apk update && \
+    apk add ${PACKAGES}
+
+RUN git clone https://github.com/samtools/htslib.git && \
+cd htslib && \
+git checkout ${SAMTOOLS_VERSION}  && \
+cd .. && \
+git clone https://github.com/samtools/samtools.git && \
+cd samtools && \
+git checkout ${SAMTOOLS_VERSION} && \
+make && \
+cp samtools /usr/bin/

src/.docker_modules/samtools/1.11/docker_init.sh

+#!/bin/sh
+docker pull lbmc/samtools:1.11
+docker build src/.docker_modules/samtools/1.11 -t 'lbmc/samtools:1.11'
+docker push lbmc/samtools:1.11

src/nf_modules/samtools/main.nf

-version = "1.7"
+version = "1.11"
 container_url = "lbmc/samtools:${version}"
 
 process filter_bam {