cudatapt: add cutadapt v1.15 for docker and nf

src/docker_modules/cutadapt/1.15/Dockerfile

+FROM alpine:3.8
+MAINTAINER Laurent Modolo
+
+ENV CUTADAPT_VERSION=1.15
+ENV PACKAGES bash \
+             python3 \
+             python3-dev \
+             musl-dev \
+             gcc
+
+RUN apk update && \
+    apk add ${PACKAGES}
+
+RUN pip3 install cutadapt==${CUTADAPT_VERSION}

src/docker_modules/cutadapt/1.15/docker_init.sh

+#!/bin/sh
+docker build src/docker_modules/cutadapt/1.15 -t 'cutadapt:1.15'

src/nf_modules/cutadapt/adaptor_removal_paired.config

@@ -4,7 +4,7 @@ profiles {
     docker.enabled = true
     process {
       withName: adaptor_removal {
-        container = "cutadapt:1.14"
+        container = "cutadapt:1.15"
       }
     }
   }

src/nf_modules/cutadapt/adaptor_removal_single.config

@@ -4,7 +4,7 @@ profiles {
     docker.enabled = true
     process {
       withName: adaptor_removal {
-        container = "cutadapt:1.14"
+        container = "cutadapt:1.15"
       }
     }
   }

src/nf_modules/cutadapt/trimming_paired.config

@@ -4,7 +4,7 @@ profiles {
     docker.enabled = true
     process {
       withName: trimming {
-        container = "cutadapt:1.14"
+        container = "cutadapt:1.15"
       }
     }
   }

src/nf_modules/cutadapt/trimming_single.config

@@ -4,7 +4,7 @@ profiles {
     docker.enabled = true
     process {
       withName: trimming {
-        container = "cutadapt:1.14"
+        container = "cutadapt:1.15"
       }
     }
   }