Skip to content
Snippets Groups Projects
Verified Commit 833c88f7 authored by Laurent Modolo's avatar Laurent Modolo
Browse files

emase-zero: change bam to bam_idx

parent 7dbcab2b
Branches
No related tags found
No related merge requests found
Hide whitespace changes
Inline Side-by-side
src/nf_modules/emase-zero/main.nf
+ 2
− 2
View file @ 833c88f7
...@@ -9,7 +9,7 @@ params.count = "-m 2" ...@@ -9,7 +9,7 @@ params.count = "-m 2"
params.count_out = "" params.count_out = ""
workflow count { workflow count {
take: take:
bam bam_idx
gtf gtf
transcript_to_gene transcript_to_gene
...@@ -18,7 +18,7 @@ workflow count { ...@@ -18,7 +18,7 @@ workflow count {
.ifEmpty(["NO T2G", ""]) .ifEmpty(["NO T2G", ""])
.set{ transcript_to_gene_optional } .set{ transcript_to_gene_optional }
tr2g(gtf, transcript_to_gene_optional) tr2g(gtf, transcript_to_gene_optional)
bam2ec(bam, gtf) bam2ec(bam_idx, gtf)
emase(bam2ec.out.bin, bam2ec.out.tsv, tr2g.out.t2g) emase(bam2ec.out.bin, bam2ec.out.tsv, tr2g.out.t2g)
emit: emit:
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment