nf module: ccin2p3 profile become cc2inp3_conda

src/nf_modules/bedtools/fasta_from_bed.config

@@ -32,7 +32,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: fasta_from_bed {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/bowtie/indexing.config

@@ -33,7 +33,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: index_fasta {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/bowtie/mapping_paired.config

@@ -33,7 +33,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: mapping_fastq {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/bowtie/mapping_single.config

@@ -33,7 +33,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: mapping_fastq {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/bowtie2/indexing.config

@@ -33,7 +33,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: index_fasta {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/bowtie2/mapping_paired.config

@@ -33,7 +33,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: mapping_fastq {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/bowtie2/mapping_single.config

@@ -33,7 +33,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: mapping_fastq {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/bwa/indexing.config

@@ -33,7 +33,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: index_fasta {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/bwa/mapping_paired.config

@@ -33,7 +33,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: mapping_fastq {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/cutadapt/adaptor_removal_paired.config

@@ -32,7 +32,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: adaptor_removal {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/cutadapt/adaptor_removal_single.config

@@ -32,7 +32,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: adaptor_removal {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/cutadapt/trimming_paired.config

@@ -32,7 +32,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: trimming {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/cutadapt/trimming_single.config

@@ -32,7 +32,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: trimming {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/deeptools/bam_to_bigwig.config

@@ -52,7 +52,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: index_bam {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/deeptools/compute_matrix.config

@@ -33,7 +33,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: compute_matrix {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/deeptools/plot_profile.config

@@ -33,7 +33,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: plot_profile {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/fastp/fastp_paired.config

@@ -32,7 +32,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: fastp_fastq {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/fastp/fastp_single.config

@@ -32,7 +32,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: fastp_fastq {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/fastqc/fastqc_paired.config

@@ -32,7 +32,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: fastqc_fastq {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"

src/nf_modules/fastqc/fastqc_single.config

@@ -32,7 +32,7 @@ profiles {
       }
     }
   }
-  ccin2p3 {
+  ccin2p3_conda {
     process{
       withName: fastqc_fastq {
         beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"