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Verified Commit 6cc2e1a8 authored by Laurent Modolo's avatar Laurent Modolo
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alntools: remove chunck option

parent 833c88f7
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...@@ -31,6 +31,6 @@ END{ ...@@ -31,6 +31,6 @@ END{
{print i"\\t"LEN[i]} {print i"\\t"LEN[i]}
} }
' ${gtf} > ${gtf.simpleName}_transcripts_lengths.tsv ' ${gtf} > ${gtf.simpleName}_transcripts_lengths.tsv
alntools bam2ec ${params.bam2ec} -t ${gtf.simpleName}_transcripts_lengths.tsv -c 8 ${bam} ${bam.simpleName}.bin alntools bam2ec ${params.bam2ec} -t ${gtf.simpleName}_transcripts_lengths.tsv ${bam} ${bam.simpleName}.bin
""" """
} }
\ No newline at end of file
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