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Verified Commit 493aaa15 authored by Laurent Modolo's avatar Laurent Modolo
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samtools: fix merge_multi_bam

parent aa838665
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...@@ -178,8 +178,10 @@ process merge_multi_bam { ...@@ -178,8 +178,10 @@ process merge_multi_bam {
tuple val(file_id), path("*_merged.bam*"), emit: bam tuple val(file_id), path("*_merged.bam*"), emit: bam
script: script:
""" """
samtools merge ${bams} > \ samtools merge -@ ${task.cpus} \
${bams[0].simpleName}_merged.bam ${bams[0].simpleName}_merged.bam \
${bams}
""" """
} }
......
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