add .signularity_in2p3 folder to fix lock problem in nf

src/nf_modules/samtools/index_bams.config

@@ -35,7 +35,7 @@ profiles {
   }
   ccin2p3 {
     singularity.enabled = true
-    singularity.cacheDir = "/sps/lbmc/common/singularity/"
+    singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: index_bam {

src/nf_modules/samtools/sort_bams.config

@@ -36,7 +36,7 @@ profiles {
   }
   ccin2p3 {
     singularity.enabled = true
-    singularity.cacheDir = "/sps/lbmc/common/singularity/"
+    singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: sort_bam {

src/nf_modules/samtools/split_bams.config

@@ -35,7 +35,7 @@ profiles {
   }
   ccin2p3 {
     singularity.enabled = true
-    singularity.cacheDir = "/sps/lbmc/common/singularity/"
+    singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: split_bam {

src/nf_modules/sratoolkit/fastqdump.config

@@ -35,7 +35,7 @@ profiles {
   }
   ccin2p3 {
     singularity.enabled = true
-    singularity.cacheDir = "/sps/lbmc/common/singularity/"
+    singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: fastq_dump {

src/nf_modules/star/indexing.config

@@ -36,7 +36,7 @@ profiles {
   }
   ccin2p3 {
     singularity.enabled = true
-    singularity.cacheDir = "/sps/lbmc/common/singularity/"
+    singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: index_fasta {

src/nf_modules/star/mapping_paired.config

@@ -36,7 +36,7 @@ profiles {
   }
   ccin2p3 {
     singularity.enabled = true
-    singularity.cacheDir = "/sps/lbmc/common/singularity/"
+    singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: mapping_fastq {

src/nf_modules/star/mapping_single.config

@@ -36,7 +36,7 @@ profiles {
   }
   ccin2p3 {
     singularity.enabled = true
-    singularity.cacheDir = "/sps/lbmc/common/singularity/"
+    singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: mapping_fastq {

src/nf_modules/subread/subread.config

@@ -53,7 +53,7 @@ profiles {
   }
   ccin2p3 {
     singularity.enabled = true
-    singularity.cacheDir = "/sps/lbmc/common/singularity/"
+    singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: sort_bam {

src/nf_modules/urqt/trimming_paired.config

@@ -36,7 +36,7 @@ profiles {
   }
   ccin2p3 {
     singularity.enabled = true
-    singularity.cacheDir = "/sps/lbmc/common/singularity/"
+    singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: trimming {

src/nf_modules/urqt/trimming_single.config

@@ -36,7 +36,7 @@ profiles {
   }
   ccin2p3 {
     singularity.enabled = true
-    singularity.cacheDir = "/sps/lbmc/common/singularity/"
+    singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: trimming {