Commit 2992a141 authored by nfontrod's avatar nfontrod
Browse files

Rnaseq.config : addition of trimming config

parent 240b4d6d
...@@ -23,4 +23,31 @@ profiles { ...@@ -23,4 +23,31 @@ profiles {
} }
} }
} }
} }
\ No newline at end of file
profiles {
docker {
docker.temp = 'auto'
docker.enabled = true
process {
$trimming {
container = "urqt:d62c1f8"
}
}
}
sge {
process{
$trimming {
beforeScript = "module purge; module load UrQt/d62c1f8"
executor = "sge"
cpus = 4
memory = "5GB"
time = "6h"
queueSize = 1000
pollInterval = '60sec'
queue = 'h6-E5-2667v4deb128'
penv = 'openmp8'
}
}
}
}
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