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Verified Commit 22455a05 authored by Laurent Modolo's avatar Laurent Modolo
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gatk4: rename _out option for gvcf

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src/nf_modules/gatk4/main.nf
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...@@ -154,13 +154,13 @@ process apply_base_recalibration { ...@@ -154,13 +154,13 @@ process apply_base_recalibration {
} }
/*******************************************************************/ /*******************************************************************/
params.variant_calling_gvcf_out = ""
process call_variants_per_sample { process call_variants_per_sample {
container = "${container_url}" container = "${container_url}"
label "big_mem_mono_cpus" label "big_mem_mono_cpus"
tag "$file_id" tag "$file_id"
if (params.variant_calling_out != "") { if (params.variant_calling_gvcf_out != "") {
publishDir "results/${params.variant_calling_out}", mode: 'copy' publishDir "results/${params.variant_calling_gvcf_out}", mode: 'copy'
} }
input: input:
......
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