config files: updater monocore queues for psmn

21a8f8b8 · Laurent Modolo · 8bcae2bf · 21a8f8b8 · 21a8f8b8 · 21a8f8b8
Verified Commit 21a8f8b8 authored 6 years ago by Laurent Modolo
--- a/src/nf_modules/bedtools/fasta_from_bed.config
+++ b/src/nf_modules/bedtools/fasta_from_bed.config
@@ -28,7 +28,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/cutadapt/adaptor_removal_paired.config
+++ b/src/nf_modules/cutadapt/adaptor_removal_paired.config
@@ -28,7 +28,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/cutadapt/adaptor_removal_single.config
+++ b/src/nf_modules/cutadapt/adaptor_removal_single.config
@@ -28,7 +28,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/cutadapt/trimming_paired.config
+++ b/src/nf_modules/cutadapt/trimming_paired.config
@@ -28,7 +28,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/cutadapt/trimming_single.config
+++ b/src/nf_modules/cutadapt/trimming_single.config
@@ -28,7 +28,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/fastp/fastp_paired.config
+++ b/src/nf_modules/fastp/fastp_paired.config
@@ -28,7 +28,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/fastp/fastp_single.config
+++ b/src/nf_modules/fastp/fastp_single.config
@@ -28,7 +28,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/fastqc/fastqc_paired.config
+++ b/src/nf_modules/fastqc/fastqc_paired.config
@@ -28,7 +28,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/fastqc/fastqc_single.config
+++ b/src/nf_modules/fastqc/fastqc_single.config
@@ -28,7 +28,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/htseq/htseq.config
+++ b/src/nf_modules/htseq/htseq.config
@@ -32,7 +32,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
      withName: counting {
        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
@@ -42,7 +42,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/multiqc/multiqc_paired.config
+++ b/src/nf_modules/multiqc/multiqc_paired.config
@@ -39,7 +39,7 @@ profiles {
        time = "6h"
        queueSize = 1.70
        pollInterval = '60sec'
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
      withName: multiqc {
        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
@@ -51,7 +51,7 @@ profiles {
        time = "6h"
        queueSize = 1.70
        pollInterval = '60sec'
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/multiqc/multiqc_single.config
+++ b/src/nf_modules/multiqc/multiqc_single.config
@@ -38,7 +38,7 @@ profiles {
        time = "6h"
        queueSize = 1.70
        pollInterval = '60sec'
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
      withName: multiqc {
        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
@@ -50,7 +50,7 @@ profiles {
        time = "6h"
        queueSize = 1.70
        pollInterval = '60sec'
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/music/peak_calling_single.config
+++ b/src/nf_modules/music/peak_calling_single.config
@@ -44,7 +44,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
      withName: music_preprocessing {
        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
@@ -54,7 +54,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
      withName: music_computation {
        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
@@ -64,7 +64,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/samtools/index_bams.config
+++ b/src/nf_modules/samtools/index_bams.config
@@ -28,7 +28,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/samtools/split_bams.config
+++ b/src/nf_modules/samtools/split_bams.config
@@ -28,7 +28,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/nf_modules/sratoolkit/fastqdump.config
+++ b/src/nf_modules/sratoolkit/fastqdump.config
@@ -28,7 +28,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
    }
  }

--- a/src/training_dataset.config
+++ b/src/training_dataset.config
@@ -124,7 +124,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
      withName: fasta_from_bed {
        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
@@ -134,7 +134,7 @@ profiles {
        cpus = 1
        memory = "20GB"
        time = "12h"
-        queue = 'monointeldeb128'
+        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
      }
      withName: index_fasta {
        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"