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Verified Commit 1f72b2c4 authored by Laurent Modolo's avatar Laurent Modolo
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fastp: update accel_s1plus protocol

parent 84daa858
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...@@ -108,6 +108,7 @@ process fastp_accel_1splus { ...@@ -108,6 +108,7 @@ process fastp_accel_1splus {
--disable_quality_filtering \ --disable_quality_filtering \
--disable_length_filtering \ --disable_length_filtering \
--disable_trim_poly_g \ --disable_trim_poly_g \
--detect_adapter_for_pe \
--stdout \ --stdout \
--in1 ${reads[0]} \ --in1 ${reads[0]} \
--in2 ${reads[1]} \ --in2 ${reads[1]} \
...@@ -132,6 +133,7 @@ process fastp_accel_1splus { ...@@ -132,6 +133,7 @@ process fastp_accel_1splus {
--disable_quality_filtering \ --disable_quality_filtering \
--disable_length_filtering \ --disable_length_filtering \
--disable_trim_poly_g \ --disable_trim_poly_g \
--detect_adapter_for_pe \
--stdout \ --stdout \
--in1 ${reads[0]} \ --in1 ${reads[0]} \
--out1 ${file_prefix}_R1_trim.fastq.gz \ --out1 ${file_prefix}_R1_trim.fastq.gz \
......
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