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Verified Commit 1edca65d authored by Laurent Modolo's avatar Laurent Modolo
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gatk4: fix BaseRecalibrator params

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......@@ -128,8 +128,8 @@ process recalibrate_snp_table {
gatk --java-options "-Xmx${xmx_memory}G" BaseRecalibrator \
-R ${fasta} \
-I ${bam} \
-knownSites ${snp_file} \
-knownSites ${indel_file} \
-known-sites ${snp_file} \
-known-sites ${indel_file} \
-O recal_data_table
"""
}
......
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