Verified Commit 0dba9f2b authored by Laurent Modolo's avatar Laurent Modolo
Browse files

Kallisto.nf: fix paired end

parent 1c82c356
......@@ -70,7 +70,7 @@ process mapping_fastq {
mkdir ${reads[0].baseName}
kallisto quant -i ${index} -t ${task.cpus} \
--bias --bootstrap-samples 100 -o ${reads[0].baseName} \
${reads[0]} ${reads[1]} &> ${pair_id}_kallisto_report.txt
${reads[0]} ${reads[1]} &> ${reads[0].baseName}_kallisto_report.txt
"""
}
......
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