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compute_matrix.config

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  • mapping_paired.config 611 B
    profiles {
      docker {
        docker.temp = 'auto'
        docker.enabled = true
        process {
          withname: mapping_fastq {
            container = "bowtie2:2.3.4.1"
          }
        }
      }
      psmn {
        process{
          withname: mapping_fastq {
            beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
            module = "Bowtie2/2.3.4.1:SAMtools/1.7"
            executor = "sge"
            cpus = 16
            memory = "30GB"
            time = "24h"
            queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
            penv = 'openmp16'
          }
        }
      }
    }