-
Laurent Modolo authoredLaurent Modolo authored
building_your_pipeline.md 18.30 KiB
Building your own pipeline
The goal of this guide is to walk you through the Nextflow pipeline building process you will learn:
- How to use this git repository (LBMC/nextflow) as a template for your project.
- The basis of Nextflow the pipeline manager that we use at the lab.
- How to build a simple pipeline for the transcript-level quantification of RNASeq data
- How to run the exact same pipeline on a computing center (PSMN)
This guide assumes that you followed the Git basis, training course.
Initialize your own project
You are going to build a pipeline for you or your team. So the first step is to create your own project.
Forking
Instead of reinventing the wheel, you can use the LBMC/nextflow as a template. To easily do so, go to the LBMC/nextflow repository and click on the fork button (you need to log-in).
In git, the action of forking means that you are going to make your own private copy of a repository. This repository will keep a link with the original LBMC/nextflow project from which you will be able to