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compute_matrix.config

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  • .gitlab-ci.yml 913 B
    # The Docker image that will be used to build your app
    image: rocker/tidyverse:4.3.2
    
    before_script:
      - apt-get update
      - apt-get install -y --no-install-recommends libcurl4-openssl-dev libxext6 libxtst6 libxt6
      - apt-get install -y --no-install-recommends qpdf pandoc pandoc-citeproc
      - R -e 'install.packages(c("testthat", "rmarkdown"));'
      - R -e "install.packages(c('matrix', 'parallel', 'data.table', 'ggplot2', 'gridExtra', 'glmmTMB', 'magrittr', 'MASS', 'reshape2', 'rlang', 'stats', 'utils', 'BiocManager', 'car'))" 
      - R -e "BiocManager::install('S4Vectors', update = FALSE)"
      - R -e "BiocManager::install('DESeq2', update = FALSE)" 
      - R -e 'install.packages(setdiff(desc::desc()$get_deps()$package, c(installed.packages(), "R")));'
    
    pages:
      stage: build
      script:
      - R -e "devtools::document(); pkgdown::build_site(override = list(destination = public/)"
      artifacts:
        paths:
        - public/