r.def

Bootstrap: docker
From: rocker/r-ver:3.5.3

%labels
MAINTAINER Laurent Modolo

%post
mkdir -p /sps /pbs /scratch
PACKAGES="libssl-dev \
libcurl4-openssl-dev \
libxml2-dev \
zlib1g-dev \
procps \
git"

apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean

R -e "install.packages('tidyverse', dependencies=TRUE, repos='https://cran.rstudio.com/')"

%environment
export R_VERSION=3.5.3

%runscript
exec /bin/bash "$@"