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Laurent Modolo authoredLaurent Modolo authored
tests.sh 424 B
./nextflow src/nf_modules/sratoolkit/fastqdump.nf \
-c src/nf_modules/sratoolkit/fastqdump.config \
-profile docker \
--list_srr "src/nf_modules/sratoolkit/list-srr.txt" \
-resume
if [ -x "$(command -v singularity)" ]; then
./nextflow src/nf_modules/sratoolkit/fastqdump.nf \
-c src/nf_modules/sratoolkit/fastqdump.config \
-profile docker \
--list_srr "src/nf_modules/sratoolkit/list-srr.txt" \
-resume
fi