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Created with Raphaël 2.2.06Aug32131Jul302726252423181312327Jun2019187654131May3025correction local alignment minus CCAmastermasterconfirg CCA_localCCA_localbowtie 2 localbowtie2 SE localchanges to destination foldersCCA removal from mature tRNA nfCCA removal from mature tRNAadd filtering step of reads based on mapping quality >=2add filtering step of reads based on mapping quality >=2final corrections to SE pipelinecorrections to pipeline SEcorrection to SE pipelineconfig for pipeline SEpipeline for Single-end SE sequencingnew pipeline_bowtie2_nosplit bamnew pipeline_bowtie2_nosplit bamcorrection bowtie 2RNAseq_sen1D.nf: mapping process: update to last modification onMerge branch 'master' of gitlab_lbmc:vvanoost/nextflowcorrections bowtie 1correction bowtie 1Merge branch 'master' of gitlab_lbmc:pipelines/nextflowBowtie: update Bowtie.nf to match testMerge branch 'master' of gitlab_lbmc:pipelines/nextflowREADME.md: update upstream urlBowtie: fix single mapping and index parsingcorrection pipleline bowtie 1pipeline bowtie2_configpipeline bowtie2change to bowtie1Bowti2: modify index handle to better deal with weird file namesMerge branch 'master' of gitlab_lbmc:vvanoost/nextflowRNAseq_sen1D.nf: fix bowtie2 index problemMerge branch 'master' of gitlab_lbmc:pipelines/nextflowBowtie2: add perl dependency and fix single-end examplecorrections fichier config fastqcfix typo in nf filescorrect MultiQCadd fastqc and multiqc to config