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Commit 5e421df0 authored by elabaron's avatar elabaron
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RNAseq.nef: fix kallisto block

parent aee8008b
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...@@ -76,15 +76,6 @@ bedtools getfasta -name \ ...@@ -76,15 +76,6 @@ bedtools getfasta -name \
""" """
} }
params.fasta = "$baseDir/data/bam/*.fasta"
log.info "fasta files : ${params.fasta}"
Channel
.fromPath( params.fasta )
.ifEmpty { error "Cannot find any fasta files matching: ${params.fasta}" }
.set { fasta_file }
process index_fasta { process index_fasta {
tag "$fasta.baseName" tag "$fasta.baseName"
publishDir "results/mapping/index/", mode: 'copy' publishDir "results/mapping/index/", mode: 'copy'
......
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