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LBMC / nextflow
1135 commits behind, 26 commits ahead of the upstream repository.
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Laurent Modolo authoredLaurent Modolo authored
Dockerfile 526 B
FROM ubuntu:18.04
MAINTAINER Laurent Modolo
ENV PICARD_VERSION=2.18.11
ENV PACKAGES default-jre=2:1.1* \
curl=7.58.0* \
ca-certificates=20180409
RUN apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean
RUN curl -k -L https://github.com/broadinstitute/picard/releases/download/${PICARD_VERSION}/picard.jar -o picard.jar && \
mkdir -p /usr/share/java/ && \
mv picard.jar /usr/share/java/
COPY PicardCommandLine /usr/bin/
RUN chmod +x /usr/bin/PicardCommandLine