Commit 5607ca75 authored 1 year ago by Sergio Sarnataro

added benchmarking

parent 880b410e

No related branches found

No related tags found

No related merge requests found

Expand all Hide whitespace changes

Inline Side-by-side

Showing

.ipynb_checkpoints/preprocessing_datasets_for_benchmarking_2000Neurons-checkpoint.ipynb 836 additions, 0 deletions

...ng_datasets_for_benchmarking_2000Neurons-checkpoint.ipynb
.ipynb_checkpoints/preprocessing_datasets_for_benchmarking_3kPBMC-checkpoint.ipynb 826 additions, 0 deletions

...cessing_datasets_for_benchmarking_3kPBMC-checkpoint.ipynb
.ipynb_checkpoints/preprocessing_datasets_for_benchmarking_paul15-checkpoint.ipynb 836 additions, 0 deletions

...cessing_datasets_for_benchmarking_paul15-checkpoint.ipynb
.ipynb_checkpoints/score_function-checkpoint.py 80 additions, 0 deletions

.ipynb_checkpoints/score_function-checkpoint.py
.ipynb_checkpoints/score_function_3kPBMC-checkpoint.ipynb 0 additions, 0 deletions

.ipynb_checkpoints/score_function_3kPBMC-checkpoint.ipynb
.ipynb_checkpoints/score_function_neurons2000-checkpoint.ipynb 902 additions, 0 deletions

...b_checkpoints/score_function_neurons2000-checkpoint.ipynb
.ipynb_checkpoints/score_function_paul15-checkpoint.ipynb 678 additions, 0 deletions

.ipynb_checkpoints/score_function_paul15-checkpoint.ipynb
.ipynb_checkpoints/test_function_scZINZEN_dataset_by_Baptiste-checkpoint.ipynb 1638 additions, 0 deletions

...st_function_scZINZEN_dataset_by_Baptiste-checkpoint.ipynb
__pycache__/score_function.cpython-310.pyc 0 additions, 0 deletions

__pycache__/score_function.cpython-310.pyc
cache/shared-projects-spatial_cell_id_merfish-clustering_optimum-datasets-3kPBMC_data-filtered_gene_bc_matrices-hg19-matrix.h5ad 0 additions, 0 deletions

...ts-3kPBMC_data-filtered_gene_bc_matrices-hg19-matrix.h5ad
cache/shared-projects-spatial_cell_id_merfish-clustering_optimum-datasets-neurons_2000-filtered_gene_bc_matrices-mm10-matrix.h5ad 0 additions, 0 deletions

...s-neurons_2000-filtered_gene_bc_matrices-mm10-matrix.h5ad
datasets/3kPBMC_data/filtered_gene_bc_matrices/hg19/barcodes.tsv 2700 additions, 0 deletions

...s/3kPBMC_data/filtered_gene_bc_matrices/hg19/barcodes.tsv
datasets/3kPBMC_data/filtered_gene_bc_matrices/hg19/genes.tsv 32738 additions, 0 deletions

...sets/3kPBMC_data/filtered_gene_bc_matrices/hg19/genes.tsv
datasets/3kPBMC_data/filtered_gene_bc_matrices/hg19/matrix.mtx 2286887 additions, 0 deletions

...ets/3kPBMC_data/filtered_gene_bc_matrices/hg19/matrix.mtx
datasets/3kPBMC_data/processed_data.h5ad 0 additions, 0 deletions

datasets/3kPBMC_data/processed_data.h5ad
datasets/neurons_2000/filtered_gene_bc_matrices/mm10/barcodes.tsv 2022 additions, 0 deletions

.../neurons_2000/filtered_gene_bc_matrices/mm10/barcodes.tsv
datasets/neurons_2000/filtered_gene_bc_matrices/mm10/genes.tsv 27998 additions, 0 deletions

...ets/neurons_2000/filtered_gene_bc_matrices/mm10/genes.tsv
datasets/neurons_2000/filtered_gene_bc_matrices/mm10/matrix.mtx 0 additions, 0 deletions

...ts/neurons_2000/filtered_gene_bc_matrices/mm10/matrix.mtx
datasets/neurons_2000/processed_data.h5ad 0 additions, 0 deletions

datasets/neurons_2000/processed_data.h5ad
datasets/paul15/processed_data.h5ad 0 additions, 0 deletions

datasets/paul15/processed_data.h5ad

with 2358141 additions and 0 deletions

Please register or to comment