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Created with Raphaël 2.2.07May217Apr1612929Mar28272625222120137654120Feb15107521Dec2019141326Oct242316121110986543226Sep2524201817141331Aug292724232221231Jul3027262524231312327Jun2019187654131May3025docker r et pythonmastermasternextflow.pbs: fix logs pathnextflow.pbs: add context demonadd pbs script for in2p3kallisto: try to remove option for in2p3 qsubkallisto: index.config test mc_huge for indexingkallisto: indexing.config add queue for in2p3kallisto: add ccin2p3_conda profile for indexingurqt: add in2p3 configsratoolkit: add in2p3 configsamtools: add in2p3 configsamblaster: add in2p3 configsambamba: add in2p3 configrsem: add in2p3 configmusic: add in2p3 configmultiqc: add in2p3 configmacs2: add in2p3 config # Please enter the commit message for your changes. Lines startinghtseq: add in2p3 confighisat2: add in2p3 configfastqc: add in2p3 configfastp: add in2p3 configdeeptools: add in2p3 configcutadapt: add in2p3 configbwa: add in2p3 configbowtie2: add in2p3 configbowtie: add in2p3 configbedtools: update in2p3 configkallisto: add in2p3 configadd .sh helpers for singularity on the ccin2p3change .sif to .img for singularity imgkallisto: fix singularity testskallisto: config for in2p3, add /usr/bin to pathkallisto: add verbose to indexing.nfkallisto: remove bash configkallisto: update in2p3 configkallisto: add info for in2p3 scratchkallisto: test of in2p3 config filekallisto: add singularity script for ccin2p3umi_tools: add singularity modulerm umitools modules to only keep umi_tools