Commits · 16f01d2fd2e1da9ad21fe133f4f6b79c5d4dbf0e · rseraphi / nextflow · GitLab

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Oct 08, 2018
- SNP_calling.nf: fix format · 16f01d2f
  Laurent Modolo authored 6 years ago
  
  16f01d2f
- SNP_calling.nf: fix missing report for samtools SNP · 8891d227
  Laurent Modolo authored 6 years ago
  
  8891d227
- SNP_calling: add vcf to csv conversion step · f7ba71e6
  Laurent Modolo authored 6 years ago
  
  f7ba71e6
- SNP_calling.nf: add SNP calling with bcftools · c72c554d
  Laurent Modolo authored 6 years ago
  
  c72c554d
Oct 06, 2018
- SNP_calling.nf: change RG tag order · e5648eb2
  Laurent Modolo authored 6 years ago
  
  e5648eb2
Oct 05, 2018
- SNP_calling.nf: add sample_name info for mapping_fastq · 533fa476
  Laurent Modolo authored 6 years ago
  
  533fa476
- SNP_calling.nf: add RG info in bowtie22 · b5b15822
  Laurent Modolo authored 6 years ago
  
  b5b15822
- SNP_calling.nf: change cpus number for bowtie · 2555926a
  Laurent Modolo authored 6 years ago
  
  2555926a
- SNP_calling.nf: working pipeline with BWA MEM · 40a19885
  Laurent Modolo authored 6 years ago
  
  40a19885
- SNP_calling.nf: add SNP_filter step · 36fafd89
  Laurent Modolo authored 6 years ago
  
  36fafd89
Oct 03, 2018
- SNP_calling.nf: fix Mutect2 variables · d8a29f60
  Laurent Modolo authored 6 years ago
  
  d8a29f60
- SNP_calling.nf: fix collect problem · 7619538a
  Laurent Modolo authored 6 years ago
  
  7619538a
- SNP_calling: test with Bowtie2 · 25be4607
  Laurent Modolo authored 6 years ago
  
  25be4607
- SNP_calling.nf: last test with BWA MEM · c9fc9da5
  Laurent Modolo authored 6 years ago
  
  c9fc9da5
Sep 26, 2018
- SNP_calling.nf: fix merge_bam · b649d2bd
  Laurent Modolo authored 6 years ago
  
  b649d2bd
Sep 25, 2018
- SNP_calling.nf: add merging step into tumor_sample and normal_sample · 60a814b3
  Laurent Modolo authored 6 years ago
  
  60a814b3
- SNP_calling.nf: sambamba change tmp dir · 209416f2
  Laurent Modolo authored 6 years ago
  
  209416f2
- SNP_calling.nf: split bam convertion and sort to avoid filling /tmp · 01aba97f
  Laurent Modolo authored 6 years ago
  
  01aba97f
Sep 24, 2018
- src/SNP_calling.nf: add Mutect2 to call SNP · 224bbd69
  Laurent Modolo authored 6 years ago
  
  224bbd69
Sep 18, 2018
- SNP_calling.nf: QC and mapping · a2f71be3
  Laurent Modolo authored 6 years ago
  
  a2f71be3