Skip to content
Snippets Groups Projects
Verified Commit eeac2fbf authored by Laurent Modolo's avatar Laurent Modolo
Browse files

hisat2: add in2p3 config

parent fecdfd5a
No related branches found
No related tags found
No related merge requests found
......@@ -33,4 +33,19 @@ profiles {
}
}
}
ccin2p3 {
process{
withName: index_fasta {
beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/hisat2/2.1.0/:/usr/bin:$PATH"
scratch = true
stageInMode = "copy"
stageOutMode = "rsync"
executor = "sge"
clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
cpus = 1
memory = "10GB"
time = "24h"
}
}
}
}
......@@ -33,4 +33,19 @@ profiles {
}
}
}
ccin2p3 {
process{
withName: mapping_fastq {
beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/hisat2/2.1.0/:/usr/bin:$PATH"
scratch = true
stageInMode = "copy"
stageOutMode = "rsync"
executor = "sge"
clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
cpus = 1
memory = "10GB"
time = "24h"
}
}
}
}
......@@ -33,4 +33,19 @@ profiles {
}
}
}
ccin2p3 {
process{
withName: mapping_fastq {
beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/hisat2/2.1.0/:/usr/bin:$PATH"
scratch = true
stageInMode = "copy"
stageOutMode = "rsync"
executor = "sge"
clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
cpus = 1
memory = "10GB"
time = "24h"
}
}
}
}
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment