UrQt: update nf config file for the PSMN

src/nf_modules/UrQt/trimming_paired.config

@@ -3,24 +3,24 @@ profiles {
     docker.temp = 'auto'
     docker.enabled = true
     process {
-      $trimming {
+      withName: trimming {
         container = "urqt:d62c1f8"
       }
     }
   }
   sge {
     process{
-      $trimming {
-        beforeScript = "module purge; module load UrQt/d62c1f8"
+      withName: trimming {
+        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+        module = "UrQt/d62c1f8"
         executor = "sge"
-        cpus = 4
+        cpus = 16
         memory = "5GB"
-        time = "6h"
-        queueSize = 1000
-        pollInterval = '60sec'
-        queue = 'h6-E5-2667v4deb128'
-        penv = 'openmp8'
+        time = "12h"
+        queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
+        penv = 'openmp16'
       }
     }
   }
 }
+

src/nf_modules/UrQt/trimming_single.config

@@ -3,24 +3,24 @@ profiles {
     docker.temp = 'auto'
     docker.enabled = true
     process {
-      $trimming {
+      withName: trimming {
         container = "urqt:d62c1f8"
       }
     }
   }
   sge {
     process{
-      $trimming {
-        beforeScript = "module purge; module load UrQt/d62c1f8"
+      withName: trimming {
+        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+        module = "UrQt/d62c1f8"
         executor = "sge"
-        cpus = 4
+        cpus = 16
         memory = "5GB"
-        time = "6h"
-        queueSize = 1000
-        pollInterval = '60sec'
-        queue = 'h6-E5-2667v4deb128'
-        penv = 'openmp8'
+        time = "12h"
+        queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
+        penv = 'openmp16'
       }
     }
   }
 }
+