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Unverified Commit d0a65940 authored by Laurent Modolo's avatar Laurent Modolo
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bwa: fix warining in tests

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src/nf_modules/bedtools/fasta_from_bed.config
+ 1
− 1
View file @ d0a65940
...@@ -12,7 +12,7 @@ profiles { ...@@ -12,7 +12,7 @@ profiles {
singularity { singularity {
singularity.enabled = true singularity.enabled = true
process { process {
withName: trimming { withName: fasta_from_bed {
container = "file://bin/bedtools:2.25.0.sif" container = "file://bin/bedtools:2.25.0.sif"
cpus = 1 cpus = 1
} }
......
src/nf_modules/bwa/tests.sh
+ 2
− 2
View file @ d0a65940
...@@ -13,7 +13,7 @@ ...@@ -13,7 +13,7 @@
./nextflow src/nf_modules/bwa/mapping_paired.nf \ ./nextflow src/nf_modules/bwa/mapping_paired.nf \
-c src/nf_modules/bwa/mapping_paired.config \ -c src/nf_modules/bwa/mapping_paired.config \
-profile docker \ -profile docker \
--index "results/mapping/index/tiny_v2*" \ --index "results/mapping/index/tiny_v2.*" \
--fastq "data/tiny_dataset/fastq/tiny*_R{1,2}.fastq" \ --fastq "data/tiny_dataset/fastq/tiny*_R{1,2}.fastq" \
-resume -resume
...@@ -35,7 +35,7 @@ if [ -x "$(command -v singularity)" ]; then ...@@ -35,7 +35,7 @@ if [ -x "$(command -v singularity)" ]; then
./nextflow src/nf_modules/bwa/mapping_paired.nf \ ./nextflow src/nf_modules/bwa/mapping_paired.nf \
-c src/nf_modules/bwa/mapping_paired.config \ -c src/nf_modules/bwa/mapping_paired.config \
-profile singularity \ -profile singularity \
--index "results/mapping/index/tiny_v2*" \ --index "results/mapping/index/tiny_v2.*" \
--fastq "data/tiny_dataset/fastq/tiny*_R{1,2}.fastq" \ --fastq "data/tiny_dataset/fastq/tiny*_R{1,2}.fastq" \
-resume -resume
......
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