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Unverified Commit 46c1f9f2 authored by Laurent Modolo's avatar Laurent Modolo
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BWA: nf update psmn config

parent 14164fee
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...@@ -11,15 +11,13 @@ profiles { ...@@ -11,15 +11,13 @@ profiles {
psmn { psmn {
process{ process{
withname: index_fasta { withname: index_fasta {
beforeScript = "module purge; module load BWA/0.7.17" beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "BWA/0.7.17"
executor = "sge" executor = "sge"
cpus = 1 cpus = 1
memory = "5GB" memory = "30GB"
time = "6h" time = "12h"
queueSize = 1000 queue = 'monointeldeb128'
pollInterval = '60sec'
queue = 'h6-E5-2667v4deb128'
penv = 'openmp8'
} }
} }
} }
......
...@@ -11,15 +11,14 @@ profiles { ...@@ -11,15 +11,14 @@ profiles {
psmn { psmn {
process{ process{
withname: mapping_fastq { withname: mapping_fastq {
beforeScript = "module purge; module load BWA/0.7.17" beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "BWA/0.7.17"
executor = "sge" executor = "sge"
cpus = 4 cpus = 16
memory = "5GB" memory = "30GB"
time = "6h" time = "24h"
queueSize = 1000 queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
pollInterval = '60sec' penv = 'openmp16'
queue = 'h6-E5-2667v4deb128'
penv = 'openmp8'
} }
} }
} }
......
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