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Verified Commit 3075c9c2 authored by Laurent Modolo's avatar Laurent Modolo
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Bowtie: add singularity files and add signature for singularity build

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#/bin/sh
sudo singularity build --force bin/bedtools:2.25.0.sif src/singularity_modules/BEDtools/2.25.0/BEDtools.def
singularity sign bin/bedtools:2.25.0.sif
#/bin/sh
sudo singularity build --force bin/bwa:0.7.17.sif src/singularity_modules/BWA/0.7.17/BWA.def
singularity sign bin/bwa:0.7.17.sif
Bootstrap: docker
From: ubuntu:18.04
%labels
MAINTAINER Laurent Modolo
%post
BOWTIE_VERSION=1.2.2
SAMTOOLS_VERSION=1.7
PACKAGES="bowtie=${BOWTIE_VERSION}* \
samtools=${SAMTOOLS_VERSION}*"
apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean
%environment
export BOWTIE_VERSION=1.2.2
export SAMTOOLS_VERSION=1.7
%runscript
exec /bin/bash "$@"
#/bin/sh
sudo singularity build --force bin/bowtie:1.2.2.sif src/singularity_modules/Bowtie/1.2.2/Bowtie.def
singularity sign bin/bowtie:1.2.2.sif
#/bin/sh
sudo singularity build --force bin/UrQt:d62c1f8.sif src/singularity_modules/UrQt/d62c1f8/UrQt.def
singularity sign bin/UrQt:d62c1f8.sif
#/bin/sh
sudo singularity build --force bin/sambamba:0.6.7.sif src/singularity_modules/sambamba/0.6.7/sambamba.def
singularity sign bin/sambamba:0.6.7.sif
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