Verified Commit 18e2c482 authored by Laurent Modolo's avatar Laurent Modolo
Browse files

README.md: add list of tools

parent 1041a4af
......@@ -76,6 +76,31 @@ for example to run the tests on `Bowtie2` run:
src/nf_modules/Bowtie2/tests/tests.sh
```
## Available tools
- BEDtools nf: ok / docker: ok / sge: ok
- Bowtie2 nf: ok / docker: ok / sge: ok
- FastQC nf: no / docker: ok / sge: ok
- HISAT2 nf: no / docker: ok / sge: ok
- HTSeq nf: ok / docker: ok / sge: ok
- Kallisto nf: ok / docker: ok / sge: ok
- MultiQC nf: no / docker: ok / sge: ok
- RSEM nf: ok / docker: ok / sge: ok
- SAMtools nf: ok / docker: ok / sge: ok
- SRAtoolkit nf: no / docker: ok / sge: ok
- Salmon nf: no / docker: ok / sge: ok
- TopHat nf: no / docker: ok / sge: ok
- Trimmomatic nf: no / docker: ok / sge: ok
- UrQt nf: ok / docker: ok / sge: ok
- canu nf: ok / docker: ok / sge: ok
- cutadapt nf: ok / docker: ok / sge: ok
- deepTools nf: no / docker: ok / sge: ok
- file_handle nf: no / docker: ok / sge: ok
- pigz nf: no / docker: ok / sge: ok
- sra-tools nf: ok / docker: no / sge: no
## Contributing
Please read [CONTRIBUTING.md](CONTRIBUTING.md) for details on our code of conduct, and the process for submitting pull requests to us.
......
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